Krister M. Swenson

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Bernard M.E. MoretProfessor emeritus, Computer & Communication Sciences, EPFL; ISCB FellowVerified email at epfl.ch
Nicholas D. PattengaleVerified email at cs.unm.edu
Yu LinSchool of Computing, Australian National UniversityVerified email at anu.edu.au
Vaibhav RajanAssistant Professor, Department of Information Systems & Analytics, School of Computing, NUSVerified email at nus.edu.sg
Mark MarronMicrosoft ResearchVerified email at microsoft.com
David SankoffUniversity of OttawaVerified email at uottawa.ca
Anne BergeronComputer Science, Université du Québec à MontréalVerified email at uqam.ca
Manuel LafondUniversité de SherbrookeVerified email at usherbrooke.ca
Pijus SimonaitisPostdoctoral Research Associate, Princeton UniversityVerified email at princeton.edu
Eric TannierINRIA, Université de Lyon 1Verified email at inria.fr
Mathieu BlanchetteProfessor of Computer Science, McGill UniversityVerified email at cs.mcgill.ca
Ghada BadrAssociate ProfessorVerified email at uottawa.ca
David H. ArdellAssociate Professor of Molecular and Cell Biology, UC MercedVerified email at ucmerced.edu
Jijun TangUniversity of South CarolinaVerified email at cse.sc.edu
Annie ChateauMaître de conférences, Université de MontpellierVerified email at lirmm.fr
Alexandros StamatakisHeidelberg Institute for Theoretical Studies and Karlsruhe Institute of TechnologyVerified email at h-its.org
Andre J. AbererVerified email at aberer.io
Eric LyonsAssociate Professor. BIO5 Institute, Genetics, Plant Sciences, Biosystems Engineering, College of AgVerified email at email.arizona.edu
Andrew Wei XuCenter for Biomedical Informatics, Harvard Medical SchoolVerified email at rics.bwh.harvard.edu
Eric CH ChenThe University of TokyoVerified email at k.u-tokyo.ac.jp

Krister M. Swenson

CNRS, Université Montpellier, LIRMM, Institut de Biologie Computationnelle

Verified email at lirmm.fr - Homepage

Computational Biology Comparative Genomics Rearrangements Consensus Methods Gene/Species Tree Reconciliation


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Approximating the true evolutionary distance between two genomes KM Swenson, M Marron, JV Earnest-DeYoung, BME Moret Journal of Experimental Algorithmics (JEA) 12, 1-17, 2008	102	2008
Genomic distances under deletions and insertions M Marron, KM Swenson, BME Moret Theoretical Computer Science 325 (3), 347-360, 2004	70	2004
An optimal reconciliation algorithm for gene trees with polytomies M Lafond, KM Swenson, N El-Mabrouk International Workshop on Algorithms in Bioinformatics, 106-122, 2012	48	2012
Uncovering hidden phylogenetic consensus in large data sets N Pattengale, A Aberer, K Swenson, A Stamatakis, B Moret IEEE/ACM transactions on computational biology and bioinformatics 8 (4), 902-911, 2011	47	2011
Genomic distances under deletions and insertions M Marron, KM Swenson, BME Moret International Computing and Combinatorics Conference, 537-547, 2003	39	2003
OMG! Orthologs in multiple genomes–competing graph-theoretical formulations C Zheng, K Swenson, E Lyons, D Sankoff International Workshop on Algorithms in Bioinformatics, 364-375, 2011	34	2011
Ancestral Genome Organization: An Alignment Approach P Holloway, K Swenson, D Ardell, N El-Mabrouk Journal of Computational Biology 20 (4), 280-295, 2013	32*	2013
Gene tree correction guided by orthology M Lafond, M Semeria, KM Swenson, E Tannier, N El-Mabrouk BMC bioinformatics 14 (S15), S5, 2013	27	2013
Heuristics for the inversion median problem V Rajan, AW Xu, Y Lin, KM Swenson, BME Moret BMC bioinformatics 11 (1), S30, 2010	27	2010
Hurdles hardly have to be heeded KM Swenson, Y Lin, V Rajan, BME Moret RECOMB International Workshop on Comparative Genomics, 241-251, 2008	25	2008
Estimating true evolutionary distances under rearrangements, duplications, and losses Y Lin, V Rajan, KM Swenson, BME Moret BMC bioinformatics 11 (S1), S54, 2010	23	2010
Gene trees and species trees: irreconcilable differences KM Swenson, N El-Mabrouk BMC bioinformatics 13 (19), S15, 2012	21	2012
A framework for orthology assignment from gene rearrangement data KM Swenson, ND Pattengale, BME Moret RECOMB Workshop on Comparative Genomics, 153-166, 2005	21	2005
Gene tree correction for reconciliation and species tree inference KM Swenson, A Doroftei, N El-Mabrouk Algorithms for Molecular Biology 7 (1), 31, 2012	20	2012
Gene tree correction for reconciliation and species tree inference: complexity and algorithms R Dondi, N El-Mabrouk, KM Swenson Journal of Discrete Algorithms 25, 51-65, 2014	19	2014
Uncovering hidden phylogenetic consensus ND Pattengale, KM Swenson, BME Moret International Symposium on Bioinformatics Research and Applications, 128-139, 2010	19	2010
Sorting signed permutations by inversions in O (n log n) time KM Swenson, V Rajan, Y Lin, BME Moret Journal of Computational Biology 17 (3), 489-501, 2010	18	2010
Phylogenetic reconstruction from complete gene orders of whole genomes KM Swenson, W Arndt, J Tang, BME Moret Proceedings of the 6th Asia Pacific Bioinformatics Conference (APBC’08 6 …, 2008	18	2008
Models and algorithms for genome rearrangement with positional constraints KM Swenson, P Simonaitis, M Blanchette Algorithms for Molecular Biology 11 (1), 13, 2016	17	2016
Rapid alignment-free phylogenetic identification of metagenomic sequences B Linard, KM Swenson, F Pardi Bioinformatics 35 (18), 3303-3312, 2019	16	2019

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