| Characterization of SARS-CoV-2 viral diversity within and across hosts P Sashittal, Y Luo, J Peng, M El-Kebir BioRxiv, 2020.05. 07.083410, 2020 | 21 | 2020 |
| Design of SARS-CoV-2 variant-specific PCR assays considering Regional and temporal characteristics C Oh*, P Sashittal*, A Zhou, L Wang, M El-Kebir, TH Nguyen Applied and environmental microbiology 88 (7), e02289-21, 2022 | 18 | 2022 |
| doubletD: detecting doublets in single-cell DNA sequencing data LL Weber*, P Sashittal*, M El-Kebir Bioinformatics 37 (Supplement_1), i214-i221, 2021 | 13 | 2021 |
| Sampling and summarizing transmission trees with multi-strain infections P Sashittal, M El-Kebir Bioinformatics 36 (Supplement_1), i362-i370, 2020 | 13 | 2020 |
| Data-driven sensor placement for fluid flows P Sashittal, DJ Bodony Theoretical and Computational Fluid Dynamics 35 (5), 709-729, 2021 | 11 | 2021 |
| Reduced-order control using low-rank dynamic mode decomposition P Sashittal, DJ Bodony Theoretical and Computational Fluid Dynamics 33, 603-623, 2019 | 11 | 2019 |
| SharpTNI: Counting and sampling parsimonious transmission networks under a weak bottleneck P Sashittal, M El-Kebir bioRxiv, 842237, 2019 | 11 | 2019 |
| Jumper enables discontinuous transcript assembly in coronaviruses P Sashittal, C Zhang, J Peng, M El-Kebir Nature Communications 12 (1), 6728, 2021 | 10 | 2021 |
| Parsimonious clone tree integration in cancer P Sashittal, S Zaccaria, M El-Kebir Algorithms for Molecular Biology 17 (1), 1-14, 2022 | 9 | 2022 |
| Adjoint-based sensitivity analysis of a reactive jet in crossflow P Sashittal, T Sayadi, P Schmid, I Jang, L Magri | 7 | 2019 |
| Low-rank dynamic mode decomposition using riemannian manifold optimization P Sashittal, DJ Bodony 2018 IEEE Conference on Decision and Control (CDC), 2265-2270, 2018 | 6 | 2018 |
| Startle: a star homoplasy approach for crispr-cas9 lineage tracing P Sashittal, H Schmidt, M Chan, BJ Raphael Cell Systems 14 (12), 1113-1121. e9, 2023 | 5 | 2023 |
| ConDoR: tumor phylogeny inference with a copy-number constrained mutation loss model P Sashittal, H Zhang, CA Iacobuzio-Donahue, BJ Raphael Genome biology 24 (1), 272, 2023 | 5 | 2023 |
| Application of high-throughput single-nucleus DNA sequencing in pancreatic cancer H Zhang, ER Karnoub, S Umeda, R Chaligné, I Masilionis, CA McIntyre, ... Nature Communications 14 (1), 749, 2023 | 5 | 2023 |
| Application of high-throughput single-nucleus DNA sequencing in pancreatic cancer H Zhang, ER Karnoub, S Umeda, R Chaligné, I Masilionis, CA McIntyre, ... Nature Communications 14 (1), 749, 2023 | 5 | 2023 |
| A zero-agnostic model for copy number evolution in cancer H Schmidt, P Sashittal, BJ Raphael PLoS computational biology 19 (11), e1011590, 2023 | 3 | 2023 |
| Modal analysis and interface tracking of multiphase flows using Dynamic Mode Decomposition P Sashittal, R Chiodi, TB Morgan, O Desjardins, TJ Heindel, DJ Bodony International Journal of Multiphase Flow 157, 104198, 2022 | 3 | 2022 |
| Parsimonious clone tree reconciliation in cancer P Sashittal, S Zaccaria, M El-Kebir Leibniz International Proceedings in Informatics, LIPIcs 201, 9, 2021 | 3 | 2021 |
| Accurate Identification of Transcription Regulatory Sequences and Genes in Coronaviruses C Zhang*, P Sashittal*, M Xiang, Y Zhang, A Kazi, M El-Kebir Molecular biology and evolution 39 (7), msac133, 2022 | 2 | 2022 |
| A refined view of pancreatic cancer genomic evolution through single-nucleus DNA sequencing H Zhang, P Sashittal, ER Karnoub, A Jakatdar, S Umeda, N Lecomte, ... Cancer Research 84 (6_Supplement), 6927-6927, 2024 | | 2024 |
Mohammed El-KebirAssistant ProfessorVerified email at illinois.edu
