| SOAP2: an improved ultrafast tool for short read alignment R Li, C Yu, Y Li, TW Lam, SM Yiu, K Kristiansen, J Wang Bioinformatics 25 (15), 1966-1967, 2009 | 2967 | 2009 |
| SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler R Luo, B Liu, Y Xie, Z Li, W Huang, J Yuan, G He, Y Chen, Q Pan, Y Liu, ... Gigascience 1 (1), 18, 2012 | 2410 | 2012 |
| The sequence and de novo assembly of the giant panda genome R Li, W Fan, G Tian, H Zhu, L He, J Cai, Q Huang, Q Cai, B Li, Y Bai, ... Nature 463 (7279), 311, 2010 | 1022 | 2010 |
| MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph D Li, CM Liu, R Luo, K Sadakane, TW Lam Bioinformatics 31 (10), 1674-1676, 2015 | 637 | 2015 |
| SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads Y Xie, G Wu, J Tang, R Luo, J Patterson, S Liu, W Huang, G He, S Gu, S Li, ... Bioinformatics 30 (12), 1660-1666, 2014 | 544 | 2014 |
| Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ... GigaScience 2 (1), 10, 2013 | 516 | 2013 |
| SOAP3: ultra-fast GPU-based parallel alignment tool for short reads CM Liu, T Wong, E Wu, R Luo, SM Yiu, Y Li, B Wang, C Yu, X Chu, K Zhao, ... Bioinformatics 28 (6), 878-879, 2012 | 224 | 2012 |
| MEGAHIT v1. 0: a fast and scalable metagenome assembler driven by advanced methodologies and community practices D Li, R Luo, CM Liu, CM Leung, HF Ting, K Sadakane, H Yamashita, ... Methods 102, 3-11, 2016 | 177 | 2016 |
| Compressed indexing and local alignment of DNA TW Lam, WK Sung, SL Tam, CK Wong, SM Yiu Bioinformatics 24 (6), 791-797, 2008 | 146 | 2008 |
| COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly B Liu, J Yuan, SM Yiu, Z Li, Y Xie, Y Chen, Y Shi, H Zhang, Y Li, TW Lam, ... Bioinformatics 28 (22), 2870-2874, 2012 | 124 | 2012 |
| SOAPsplice: genome-wide ab initio detection of splice junctions from RNA-Seq data S Huang, J Zhang, R Li, W Zhang, Z He, TW Lam, Z Peng, SM Yiu Frontiers in genetics 2, 46, 2011 | 122 | 2011 |
| Energy efficient online deadline scheduling HL Chan, WT Chan, TW Lam, LK Lee, KS Mak, PWH Wong Proceedings of the eighteenth annual ACM-SIAM symposium on Discrete …, 2007 | 116 | 2007 |
| SOAP3-dp: fast, accurate and sensitive GPU-based short read aligner R Luo, T Wong, J Zhu, CM Liu, X Zhu, E Wu, LK Lee, H Lin, W Zhu, ... PloS one 8 (5), e65632, 2013 | 106 | 2013 |
| Scheduling for speed bounded processors N Bansal, HL Chan, TW Lam, LK Lee International Colloquium on Automata, Languages, and Programming, 409-420, 2008 | 106 | 2008 |
| Compressed indexes for dynamic text collections HL Chan, WK Hon, TW Lam, K Sadakane ACM Transactions on Algorithms (TALG) 3 (2), 21, 2007 | 100 | 2007 |
| High throughput short read alignment via bi-directional BWT TW Lam, R Li, A Tam, S Wong, E Wu, SM Yiu 2009 IEEE International Conference on Bioinformatics and Biomedicine, 31-36, 2009 | 97 | 2009 |
| Speed scaling functions for flow time scheduling based on active job count TW Lam, LK Lee, IKK To, PWH Wong European Symposium on Algorithms, 647-659, 2008 | 94 | 2008 |
| Filtering of ineffective siRNAs and improved siRNA design tool SM Yiu, PWH Wong, TW Lam, YC Mui, HF Kung, M Lin, YT Cheung Bioinformatics 21 (2), 144-151, 2004 | 93 | 2004 |
| Finding connected components in O (log n log log n) time on the EREW PRAM KW Chong, TW Lam Journal of Algorithms 18 (3), 378-402, 1995 | 78 | 1995 |
| Optimal edge ranking of trees in linear time TW Lam, FL Yue Algorithmica 30 (1), 12-33, 2001 | 75 | 2001 |