Tak-Wah Lam
Tak-Wah Lam
Verified email at cs.hku.hk - Homepage
TitleCited byYear
SOAP2: an improved ultrafast tool for short read alignment
R Li, C Yu, Y Li, TW Lam, SM Yiu, K Kristiansen, J Wang
Bioinformatics 25 (15), 1966-1967, 2009
30662009
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
R Luo, B Liu, Y Xie, Z Li, W Huang, J Yuan, G He, Y Chen, Q Pan, Y Liu, ...
Gigascience 1 (1), 18, 2012
25902012
The sequence and de novo assembly of the giant panda genome
R Li, W Fan, G Tian, H Zhu, L He, J Cai, Q Huang, Q Cai, B Li, Y Bai, ...
Nature 463 (7279), 311, 2010
10532010
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
D Li, CM Liu, R Luo, K Sadakane, TW Lam
Bioinformatics 31 (10), 1674-1676, 2015
7332015
SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads
Y Xie, G Wu, J Tang, R Luo, J Patterson, S Liu, W Huang, G He, S Gu, S Li, ...
Bioinformatics 30 (12), 1660-1666, 2014
5852014
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ...
GigaScience 2 (1), 10, 2013
5402013
SOAP3: ultra-fast GPU-based parallel alignment tool for short reads
CM Liu, T Wong, E Wu, R Luo, SM Yiu, Y Li, B Wang, C Yu, X Chu, K Zhao, ...
Bioinformatics 28 (6), 878-879, 2012
2342012
MEGAHIT v1. 0: a fast and scalable metagenome assembler driven by advanced methodologies and community practices
D Li, R Luo, CM Liu, CM Leung, HF Ting, K Sadakane, H Yamashita, ...
Methods 102, 3-11, 2016
2002016
Compressed indexing and local alignment of DNA
TW Lam, WK Sung, SL Tam, CK Wong, SM Yiu
Bioinformatics 24 (6), 791-797, 2008
1522008
COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly
B Liu, J Yuan, SM Yiu, Z Li, Y Xie, Y Chen, Y Shi, H Zhang, Y Li, TW Lam, ...
Bioinformatics 28 (22), 2870-2874, 2012
1282012
SOAPsplice: genome-wide ab initio detection of splice junctions from RNA-Seq data
S Huang, J Zhang, R Li, W Zhang, Z He, TW Lam, Z Peng, SM Yiu
Frontiers in genetics 2, 46, 2011
1242011
Energy efficient online deadline scheduling
HL Chan, WT Chan, TW Lam, LK Lee, KS Mak, PWH Wong
Proceedings of the eighteenth annual ACM-SIAM symposium on Discrete …, 2007
1172007
SOAP3-dp: fast, accurate and sensitive GPU-based short read aligner
R Luo, T Wong, J Zhu, CM Liu, X Zhu, E Wu, LK Lee, H Lin, W Zhu, ...
PloS one 8 (5), e65632, 2013
1102013
Scheduling for speed bounded processors
N Bansal, HL Chan, TW Lam, LK Lee
International Colloquium on Automata, Languages, and Programming, 409-420, 2008
1092008
Compressed indexes for dynamic text collections
HL Chan, WK Hon, TW Lam, K Sadakane
ACM Transactions on Algorithms (TALG) 3 (2), 21, 2007
1012007
High throughput short read alignment via bi-directional BWT
TW Lam, R Li, A Tam, S Wong, E Wu, SM Yiu
2009 IEEE International Conference on Bioinformatics and Biomedicine, 31-36, 2009
982009
Speed scaling functions for flow time scheduling based on active job count
TW Lam, LK Lee, IKK To, PWH Wong
European Symposium on Algorithms, 647-659, 2008
952008
Filtering of ineffective siRNAs and improved siRNA design tool
SM Yiu, PWH Wong, TW Lam, YC Mui, HF Kung, M Lin, YT Cheung
Bioinformatics 21 (2), 144-151, 2004
952004
Finding connected components in O (log n log log n) time on the EREW PRAM
KW Chong, TW Lam
Journal of Algorithms 18 (3), 378-402, 1995
781995
Optimal edge ranking of trees in linear time
TW Lam, FL Yue
Algorithmica 30 (1), 12-33, 2001
772001
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Articles 1–20