Daniele Ramazzotti
Daniele Ramazzotti
Department of Medicine and Surgery, University of Milano-Bicocca, Milano, Italy
Verified email at unimib.it - Homepage
Title
Cited by
Cited by
Year
Visualization and analysis of single-cell RNA-seq data by kernel-based similarity learning
B Wang, J Zhu, E Pierson, D Ramazzotti, S Batzoglou
Nature Methods 14 (4), 414-416, 2017
4072017
Secondary analysis of electronic health records
MITC Data
Springer International Publishing, 2016
141*2016
Assessment of network module identification across complex diseases
S Choobdar, ME Ahsen, J Crawford, M Tomasoni, T Fang, D Lamparter, ...
Nature Methods 16 (9), 843-852, 2019
125*2019
Detecting repeated cancer evolution from multi-region tumor sequencing data
G Caravagna, Y Giarratano, D Ramazzotti, I Tomlinson, TA Graham, ...
Nature methods 15 (9), 707-714, 2018
902018
CAPRI: efficient inference of cancer progression models from cross-sectional data
D Ramazzotti, G Caravagna, LO Loohuis, A Graudenzi, I Korsunsky, ...
Bioinformatics 31 (18), 3016-3026, 2015
752015
Algorithmic methods to infer the evolutionary trajectories in cancer progression
G Caravagna, A Graudenzi, D Ramazzotti, R Sanz-Pamplona, L De Sano, ...
Proceedings of the National Academy of Sciences 113 (28), E4025-E4034, 2016
722016
Exposing the probabilistic causal structure of discrimination
F Bonchi, S Hajian, B Mishra, D Ramazzotti
International Journal of Data Science and Analytics, 2015
692015
Multi-omic tumor data reveal diversity of molecular mechanisms that correlate with survival
D Ramazzotti, A Lal, B Wang, S Batzoglou, A Sidow
Nature Communications 9 (1), 4453, 2018
642018
Inferring tree causal models of cancer progression with probability raising
LO Loohuis, G Caravagna, A Graudenzi, D Ramazzotti, G Mauri, ...
PloS one 9 (10), e108358, 2014
562014
SIMLR: A Tool for Large‐Scale Genomic Analyses by Multi‐Kernel Learning
B Wang, D Ramazzotti, L De Sano, J Zhu, E Pierson, S Batzoglou
PROTEOMICS, 2017
55*2017
OncoScore: a novel, Internet-based tool to assess the oncogenic potential of genes
R Piazza, D Ramazzotti, R Spinelli, A Pirola, L De Sano, P Ferrari, ...
Scientific reports 7, 46290, 2017
292017
TRONCO: an R package for the inference of cancer progression models from heterogeneous genomic data
L De Sano, G Caravagna, D Ramazzotti, A Graudenzi, G Mauri, B Mishra, ...
Bioinformatics 32 (12), 1911-1913, 2016
292016
Learning the structure of Bayesian Networks: A quantitative assessment of the effect of different algorithmic schemes
S Beretta, M Castelli, I Gonçalves, R Henriques, D Ramazzotti
Complexity 2018, 2018
27*2018
Mutational signatures and heterogeneous host response revealed via large-scale characterization of SARS-CoV-2 genomic diversity
A Graudenzi, D Maspero, F Angaroni, R Piazza, D Ramazzotti
iScience, 102116, 2021
26*2021
VERSO: a comprehensive framework for the inference of robust phylogenies and the quantification of intra-host genomic diversity of viral samples
D Ramazzotti, F Angaroni, D Maspero, C Gambacorti-Passerini, ...
Patterns, 100212, 2021
25*2021
Learning mutational graphs of individual tumour evolution from single-cell and multi-region sequencing data
D Ramazzotti, A Graudenzi, L De Sano, M Antoniotti, G Caravagna
BMC Bioinformatics 20 (1), 210, 2019
242019
Causal data science for financial stress testing
G Gao, B Mishra, D Ramazzotti
Journal of Computational Science, 2018
22*2018
Modeling cumulative biological phenomena with Suppes-Bayes causal networks
D Ramazzotti, A Graudenzi, G Caravagna, M Antoniotti
Evolutionary Bioinformatics 14, 1176934318785167, 2018
182018
Comprehensive genomic characterization of breast tumors with BRCA1 and BRCA2 mutations
A Lal, D Ramazzotti, Z Weng, K Liu, JM Ford, A Sidow
BMC medical genomics 12 (1), 1-13, 2019
162019
Improved Survival of Cancer Patients Admitted to the Intensive Care Unit between 2002 and 2011 at a US Teaching Hospital
CM Sauer, J Dong, LA Celi, D Ramazzotti
Cancer research and treatment: official journal of Korean Cancer Association …, 2019
162019
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Articles 1–20