Mikhail Kolmogorov
Mikhail Kolmogorov
Postdoctoral Fellow, UC Santa Cruz
Verified email at ucsc.edu - Homepage
Cited by
Cited by
Assembly of long, error-prone reads using repeat graphs
M Kolmogorov, J Yuan, Y Lin, PA Pevzner
Nature biotechnology 37 (5), 540-546, 2019
Assembly of long error-prone reads using de Bruijn graphs
Y Lin, J Yuan, M Kolmogorov, MW Shen, M Chaisson, PA Pevzner
Proceedings of the National Academy of Sciences 113 (52), E8396-E8405, 2016
Ragout—a reference-assisted assembly tool for bacterial genomes
M Kolmogorov, B Raney, B Paten, S Pham
Bioinformatics 30 (12), i302-i309, 2014
Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci
J Lilue, AG Doran, IT Fiddes, M Abrudan, J Armstrong, R Bennett, ...
Nature Genetics, 1, 2018
Sibelia: a scalable and comprehensive synteny block generation tool for closely related microbial genomes
I Minkin, A Patel, M Kolmogorov, N Vyahhi, S Pham
International Workshop on Algorithms in Bioinformatics, 215-229, 2013
metaFlye: scalable long-read metagenome assembly using repeat graphs
M Kolmogorov, DM Bickhart, B Behsaz, A Gurevich, M Rayko, SB Shin, ...
Nature Methods, 1-8, 2020
High-quality genome sequences of uncultured microbes by assembly of read clouds
A Bishara, EL Moss, M Kolmogorov, AE Parada, Z Weng, A Sidow, ...
Nature biotechnology 36 (11), 1067-1075, 2018
Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes
D Thybert, M Roller, FCP Navarro, I Fiddes, I Streeter, C Feig, ...
Genome research 28 (4), 448-459, 2018
Chromosome assembly of large and complex genomes using multiple references
M Kolmogorov, J Armstrong, BJ Raney, I Streeter, M Dunn, F Yang, ...
Genome research 28 (11), 1720-1732, 2018
Single-molecule protein identification by sub-nanopore sensors
M Kolmogorov, E Kennedy, Z Dong, G Timp, PA Pevzner
PLoS computational biology 13 (5), e1005356, 2017
The complete sequence of a human genome
S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ...
bioRxiv, 2021
SpectroGene: a tool for proteogenomic annotations using top-down spectra
M Kolmogorov, X Liu, PA Pevzner
Journal of proteome research 15 (1), 144-151, 2016
Assembly Graph Browser: interactive visualization of assembly graphs
A Mikheenko, M Kolmogorov
Bioinformatics 35 (18), 3476-3478, 2019
Synteny paths for assembly graphs comparison
E Polevikov, M Kolmogorov
19th International Workshop on Algorithms in Bioinformatics (WABI 2019), 2019
Critical Assessment of Metagenome Interpretation-the second round of challenges
F Meyer, A Fritz, ZL Deng, D Koslicki, A Gurevich, G Robertson, M Alser, ...
bioRxiv, 2021
Generation of lineage-resolved complete metagenome-assembled genomes by precision phasing
DM Bickhart, M Kolmogorov, E Tseng, D Portik, A Korobeynikov, ...
bioRxiv, 2021
Algorithms for long-read assembly
MA Kolmogorov
University of California, San Diego, 2019
Assembling Long Accurate Reads Using de Bruijn Graphs
A Bankevich, A Bzikadze, M Kolmogorov, PA Pevzner
bioRxiv, 2020
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