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A plasmid DNA-launched SARS-CoV-2 reverse genetics system and coronavirus toolkit for COVID-19 research SJ Rihn, A Merits, S Bakshi, ML Turnbull, A Wickenhagen, AJT Alexander, ... PLoS biology 19 (2), e3001091, 2021 | 183 | 2021 |
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Quality control of next-generation sequencing data without a reference UH Trivedi, T Cézard, S Bridgett, A Montazam, J Nichols, M Blaxter, ... Frontiers in genetics 5, 81525, 2014 | 102 | 2014 |
Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland A da Silva Filipe, JG Shepherd, T Williams, J Hughes, E Aranday-Cortes, ... Nature Microbiology 6 (1), 112-122, 2021 | 101 | 2021 |
Human cytomegalovirus interactome analysis identifies degradation hubs, domain associations and viral protein functions LV Nobre, K Nightingale, BJ Ravenhill, R Antrobus, L Soday, J Nichols, ... Elife 8, e49894, 2019 | 87 | 2019 |
Subgenomic RNA identification in SARS-CoV-2 genomic sequencing data MD Parker, BB Lindsey, S Leary, S Gaudieri, A Chopra, M Wyles, ... Genome research 31 (4), 645-658, 2021 | 48 | 2021 |
Human cytomegalovirus protein pUL36: A dual cell death pathway inhibitor A Fletcher-Etherington, L Nobre, K Nightingale, R Antrobus, J Nichols, ... Proceedings of the National Academy of Sciences 117 (31), 18771-18779, 2020 | 48 | 2020 |
Human cytomegalovirus protein RL1 degrades the antiviral factor SLFN11 via recruitment of the CRL4 E3 ubiquitin ligase complex K Nightingale, M Potts, LM Hunter, CA Fielding, CM Zerbe, ... Proceedings of the National Academy of Sciences 119 (6), e2108173119, 2022 | 25 | 2022 |
Genomic epidemiology of SARS-CoV-2 spread in Scotland highlights the role of European travel in COVID-19 emergence ADS Filipe, J Shepherd, T Williams, J Hughes, E Aranday-Cortes, ... MedRxiv, 2020.06. 08.20124834, 2020 | 25 | 2020 |
Elevated temperature inhibits SARS-CoV-2 replication in respiratory epithelium independently of IFN-mediated innate immune defenses V Herder, K Dee, JK Wojtus, I Epifano, D Goldfarb, C Rozario, Q Gu, ... PLoS biology 19 (12), e3001065, 2021 | 22 | 2021 |
Genetic epidemiology of SARS-CoV-2 transmission in renal dialysis units–A high risk community-hospital interface KK Li, YM Woo, O Stirrup, J Hughes, A Ho, ADS Filipe, N Johnson, ... Journal of Infection 83 (1), 96-103, 2021 | 12 | 2021 |
Epidemic waves of COVID-19 in Scotland: a genomic perspective on the impact of the introduction and relaxation of lockdown on SARS-CoV-2 SJ Lycett, J Hughes, MP McHugh, A da Silva Filipe, R Dewar, L Lu, ... MedRxiv, 2021.01. 08.20248677, 2021 | 12 | 2021 |
Variation in human herpesvirus 6B telomeric integration, excision, and transmission between tissues and individuals ML Wood, CD Veal, R Neumann, NM Suárez, J Nichols, AJ Parker, ... Elife 10, e70452, 2021 | 8 | 2021 |
LoReTTA, a user-friendly tool for assembling viral genomes from PacBio sequence data A Al Qaffas, J Nichols, AJ Davison, A Ourahmane, L Hertel, MA McVoy, ... Virus evolution 7 (1), veab042, 2021 | 8 | 2021 |
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ADAM17 targeting by human cytomegalovirus remodels the cell surface proteome to simultaneously regulate multiple immune pathways A Rubina, M Patel, K Nightingale, M Potts, CA Fielding, S Kollnberger, ... Proceedings of the National Academy of Sciences 120 (33), e2303155120, 2023 | 6 | 2023 |
Genome sequences of five arenaviruses from pygmy mice (Mus minutoides) in Sierra Leone M Vučak, J Bangura, BM Ghersi, J Nichols, J Hughes, A da Silva Filipe, ... Microbiology resource announcements 11 (5), e00095-22, 2022 | 5 | 2022 |
Identifying the genetic basis of viral spillover using Lassa virus as a test case AOB Whitlock, BH Bird, B Ghersi, AJ Davison, J Hughes, J Nichols, ... Royal Society Open Science 10 (3), 221503, 2023 | 3 | 2023 |