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Eduardo Rocha
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Year
The complete genome sequence of the Gram-positive bacterium Bacillus subtilis
FJ Kunst, N Ogasawara, I Moszer, AM Albertini, G Alloni, V Azevedo, ...
Nature 390 (6657), 249-256, 1997
48011997
Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths
M Touchon, C Hoede, O Tenaillon, V Barbe, S Baeriswyl, P Bidet, ...
PLoS genetics 5 (1), e1000344, 2009
13172009
Mobility of plasmids
C Smillie, MP Garcillán-Barcia, MV Francia, EPC Rocha, F de la Cruz
Microbiology and Molecular Biology Reviews 74 (3), 434-452, 2010
12972010
CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins
D Couvin, A Bernheim, C Toffano-Nioche, M Touchon, J Michalik, ...
Nucleic acids research 46 (W1), W246-W251, 2018
10292018
Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity
MM Maury, YH Tsai, C Charlier, M Touchon, V Chenal-Francisque, ...
Nature genetics 48 (3), 308-313, 2016
6152016
Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes
A Moura, A Criscuolo, H Pouseele, MM Maury, A Leclercq, C Tarr, ...
Nature microbiology 2 (2), 1-10, 2016
596*2016
Horizontal transfer, not duplication, drives the expansion of protein families in prokaryotes
TJ Treangen, EPC Rocha
PLoS genetics 7 (1), e1001284, 2011
5612011
Base composition bias might result from competition for metabolic resources
EPC Rocha, A Danchin
TRENDS in Genetics 18 (6), 291-294, 2002
5312002
Codon usage bias from tRNA's point of view: redundancy, specialization, and efficient decoding for translation optimization
EPC Rocha
Genome research 14 (11), 2279-2286, 2004
4722004
Comparisons of dN/dS are time dependent for closely related bacterial genomes
EPC Rocha, JM Smith, LD Hurst, MTG Holden, JE Cooper, NH Smith, ...
Journal of theoretical biology 239 (2), 226-235, 2006
4582006
Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125
C Médigue, E Krin, G Pascal, V Barbe, A Bernsel, PN Bertin, F Cheung, ...
Genome research 15 (10), 1325-1335, 2005
4532005
The Genome of Burkholderia cenocepacia J2315, an Epidemic Pathogen of Cystic Fibrosis Patients
MTG Holden, HMB Seth-Smith, LC Crossman, M Sebaihia, SD Bentley, ...
Journal of bacteriology 191 (1), 261-277, 2009
4222009
The repertoire of ICE in prokaryotes underscores the unity, diversity, and ubiquity of conjugation
J Guglielmini, L Quintais, MP Garcillán-Barcia, F de La Cruz, EPC Rocha
PLoS genetics 7 (8), e1002222, 2011
4082011
Comparative and evolutionary analysis of the bacterial homologous recombination systems
EPC Rocha, E Cornet, B Michel
PLoS genetics 1 (2), e15, 2005
3912005
The organization of the bacterial genome
EPC Rocha
Annual review of genetics 42 (1), 211-233, 2008
3822008
The systemic imprint of growth and its uses in ecological (meta) genomics
S Vieira-Silva, EPC Rocha
PLoS genetics 6 (1), e1000808, 2010
3772010
What traits are carried on mobile genetic elements, and why?
DJ Rankin, EPC Rocha, SP Brown
Heredity 106 (1), 1-10, 2011
3702011
Causes for the intriguing presence of tRNAs in phages
M Bailly-Bechet, M Vergassola, E Rocha
Genome research 17 (10), 1486-1495, 2007
3692007
Identification of protein secretion systems in bacterial genomes
SS Abby, J Cury, J Guglielmini, B Néron, M Touchon, EPC Rocha
Scientific reports 6 (1), 23080, 2016
3652016
Pervasive domestication of defective prophages by bacteria
LM Bobay, M Touchon, EPC Rocha
Proceedings of the National Academy of Sciences 111 (33), 12127-12132, 2014
3422014
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Articles 1–20