| metaSPAdes: a new versatile metagenomic assembler S Nurk, D Meleshko, A Korobeynikov, PA Pevzner Genome research 27 (5), 824-834, 2017 | 2233 | 2017 |
| Assembling genomes and mini-metagenomes from highly chimeric reads S Nurk, A Bankevich, D Antipov, A Gurevich, A Korobeynikov, A Lapidus, ... Research in computational molecular biology., 158–170, 2013 | 1856* | 2013 |
| Singular spectrum analysis with R N Golyandina, A Korobeynikov, A Zhigljavsky Springer Berlin Heidelberg, 2018 | 821 | 2018 |
| Using SPAdes de novo assembler A Prjibelski, D Antipov, D Meleshko, A Lapidus, A Korobeynikov Current protocols in bioinformatics 70 (1), e102, 2020 | 560 | 2020 |
| BayesHammer: Bayesian clustering for error correction in single-cell sequencing SI Nikolenko, AI Korobeynikov, MA Alekseyev BMC genomics 14 (1), 1-11, 2013 | 451 | 2013 |
| hybridSPAdes: an algorithm for hybrid assembly of short and long reads D Antipov, A Korobeynikov, JS McLean, PA Pevzner Bioinformatics 32 (7), 1009-1015, 2016 | 419 | 2016 |
| MGnify: the microbiome analysis resource in 2020 AL Mitchell, A Almeida, M Beracochea, M Boland, J Burgin, G Cochrane, ... Nucleic acids research 48 (D1), D570-D578, 2020 | 353 | 2020 |
| Basic singular spectrum analysis and forecasting with R N Golyandina, A Korobeynikov Computational Statistics & Data Analysis 71, 934-954, 2014 | 252 | 2014 |
| Dereplication of microbial metabolites through database search of mass spectra H Mohimani, A Gurevich, A Shlemov, A Mikheenko, A Korobeynikov, ... Nature communications 9 (1), 4035, 2018 | 178 | 2018 |
| Characterization of cyanobacterial hydrocarbon composition and distribution of biosynthetic pathways RC Coates, S Podell, A Korobeynikov, A Lapidus, P Pevzner, ... PloS one 9 (1), e85140, 2014 | 168 | 2014 |
| Petabase-scale sequence alignment catalyses viral discovery RC Edgar, J Taylor, V Lin, T Altman, P Barbera, D Meleshko, D Lohr, ... Nature 602 (7895), 142-147, 2022 | 152 | 2022 |
| Combining mass spectrometric metabolic profiling with genomic analysis: a powerful approach for discovering natural products from cyanobacteria K Kleigrewe, J Almaliti, IY Tian, RB Kinnel, A Korobeynikov, EA Monroe, ... Journal of natural Products 78 (7), 1671-1682, 2015 | 146 | 2015 |
| Research in computational molecular biology S Nurk, A Bankevich, D Antipov, A Gurevich, A Korobeynikov, A Lapidus, ... Proceedings of the 17th Annual International Conference, RECOMB 2013 …, 2013 | 139 | 2013 |
| Multivariate and 2D extensions of singular spectrum analysis with the Rssa package N Golyandina, A Korobeynikov, A Shlemov, K Usevich arXiv preprint arXiv:1309.5050, 2013 | 138 | 2013 |
| Computation-and space-efficient implementation of SSA A Korobeynikov arXiv preprint arXiv:0911.4498, 2009 | 120 | 2009 |
| ExSPAnder: a universal repeat resolver for DNA fragment assembly AD Prjibelski, I Vasilinetc, A Bankevich, A Gurevich, T Krivosheeva, ... Bioinformatics 30 (12), i293-i301, 2014 | 108 | 2014 |
| Critical assessment of metagenome interpretation: the second round of challenges F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ... Nature methods 19 (4), 429-440, 2022 | 82 | 2022 |
| Comparative genomics uncovers the prolific and distinctive metabolic potential of the cyanobacterial genus Moorea T Leao, G Castelão, A Korobeynikov, EA Monroe, S Podell, E Glukhov, ... Proceedings of the National Academy of Sciences 114 (12), 3198-3203, 2017 | 82 | 2017 |
| Sequencing rare marine actinomycete genomes reveals high density of unique natural product biosynthetic gene clusters MA Schorn, MM Alanjary, K Aguinaldo, A Korobeynikov, S Podell, N Patin, ... Microbiology 162 (12), 2075, 2016 | 69 | 2016 |
| Increased diversity of peptidic natural products revealed by modification-tolerant database search of mass spectra A Gurevich, A Mikheenko, A Shlemov, A Korobeynikov, H Mohimani, ... Nature microbiology 3 (3), 319-327, 2018 | 64 | 2018 |
Pavel PevznerProfessor of Computer Science, University of California at San DiegoVerified email at eng.ucsd.edu
