Matthew C Hale
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Next-generation pyrosequencing of gonad transcriptomes in the polyploid lake sturgeon (Acipenser fulvescens): the relative merits of normalization and rarefaction in gene discovery
MC Hale, CR McCormick, JR Jackson, JA DeWoody
BMC genomics 10 (1), 1-11, 2009
Genetic Architecture of Migration-Related Traits in Rainbow and Steelhead Trout, Oncorhynchus mykiss
BC Hecht, FP Thrower, MC Hale, MR Miller, KM Nichols
G3: Genes| Genomes| Genetics 2 (9), 1113-1127, 2012
Evaluating Adaptive Divergence Between Migratory and Nonmigratory Ecotypes of a Salmonid Fish, Oncorhynchus mykiss
MC Hale, FP Thrower, EA Berntson, MR Miller, KM Nichols
G3: Genes, Genomes, Genetics 3 (8), 1273-1285, 2013
A predicted microsatellite map of the passerine genome based on chicken–passerine sequence similarity
DA Dawson, T Burke, B Hansson, J Pandhal, MC Hale, GN Hinten, J Slate
Molecular Ecology 15 (5), 1299-1320, 2006
Discovery and evaluation of candidate sex-determining genes and xenobiotics in the gonads of lake sturgeon (Acipenser fulvescens)
MC Hale, JR Jackson, JA DeWoody
Genetica 138 (7), 745-756, 2010
Simple sequence repeats in zebra finch (Taeniopygia guttata) expressed sequence tags: a new resource for evolutionary genetic studies of passerines
J Slate, MC Hale, TR Birkhead
Bmc Genomics 8 (1), 1-12, 2007
Evidence of inbreeding depression but not inbreeding avoidance in a natural house sparrow population
AM Billing, AM Lee, S Skjelseth, ÅSAA BORG, MC Hale, JON Slate, ...
Molecular Ecology 21 (6), 1487-1499, 2012
Differential gene expression in male and female rainbow trout embryos prior to the onset of gross morphological differentiation of the gonads
MC Hale, P Xu, J Scardina, PA Wheeler, GH Thorgaard, KM Nichols
BMC genomics 12 (1), 1-19, 2011
Ontogenetic changes in embryonic and brain gene expression in progeny produced from migratory and resident Oncorhynchus mykiss
GJ McKinney, MC Hale, G Goetz, M Gribskov, FP Thrower, KM Nichols
Molecular Ecology 24 (8), 1792-1809, 2015
RNA-seq reveals differential gene expression in the brains of juvenile resident and migratory smolt rainbow trout (Oncorhynchus mykiss)
MC Hale, GJ McKinney, FP Thrower, KM Nichols
Comparative Biochemistry and Physiology Part D: Genomics and Proteomics 20 …, 2016
Comparative transcriptomics and gene expression in larval tiger salamander (Ambystoma tigrinum) gill and lung tissues as revealed by pyrosequencing
SH Eo, JM Doyle, MC Hale, NJ Marra, JD Ruhl, JA DeWoody
Gene 492 (2), 329-338, 2012
A priori and a posteriori approaches for finding genes of evolutionary interest in non-model species: osmoregulatory genes in the kidney transcriptome of the desert rodent …
NJ Marra, SH Eo, MC Hale, PM Waser, JA DeWoody
Comparative Biochemistry and Physiology Part D: Genomics and Proteomics 7 (4 …, 2012
SNP‐SCALE: SNP scoring by colour and length exclusion
GN Hinten, MC Hale, J Gratten, JA Mossman, BV Lowder, MK Mann, ...
Molecular Ecology Notes 7 (3), 377-388, 2007
A comparison of synteny and gene order on the homologue of chicken chromosome 7 between two passerine species and between passerines and chicken
MC Hale, H Jensen, TR Birkhead, T Burke, J Slate
Cytogenetic and Genome Research 121 (2), 120-129, 2008
Small subordinate male advantage in the zebrafish
PJ Watt, A Skinner, M Hale, S Nakagawa, T Burke
Ethology 117 (11), 1003-1008, 2011
4 Vertebrate sex-determining genes and their potential utility in conservation, with particular emphasis on fishes
JA DeWoody, MC Hale, JC Avise
Molecular Approaches in Natural Resource Conservation and Management, 74, 2010
Long-term conservation of ohnologs through partial tetrasomy following whole-genome duplication in Salmonidae
MA Campbell, MC Hale, GJ McKinney, KM Nichols, DE Pearse
G3: Genes, Genomes, Genetics 9 (6), 2017-2028, 2019
Evidence of sex-bias in gene expression in the brain transcriptome of two populations of rainbow trout (Oncorhynchus mykiss) with divergent life histories
MC Hale, GJ McKinney, FP Thrower, KM Nichols
PLoS One 13 (2), e0193009, 2018
Microsatellite analyses across three diverse vertebrate transcriptomes (Acipenser fulvescens, Ambystoma tigrinum, and Dipodomys spectabilis)
JM Doyle, G Siegmund, JD Ruhl, SH Eo, MC Hale, NJ Marra, PM Waser, ...
Genome 56 (7), 407-414, 2013
A large-scale chromosomal inversion is not associated with life history development in rainbow trout from Southeast Alaska
SY Weinstein, FP Thrower, KM Nichols, MC Hale
PloS one 14 (9), e0223018, 2019
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