关注
He Zhang
He Zhang
Raina Biosciences, Baidu Research USA (previously), Oregon State University (previously)
在 rainabio.com 的电子邮件经过验证
标题
引用次数
引用次数
年份
Algorithm for optimized mRNA design improves stability and immunogenicity
H Zhang, L Zhang, A Lin, C Xu, Z Li, K Liu, B Liu, X Ma, F Zhao, H Jiang, ...
Nature 621, 396–403, 2023
1752023
LinearFold: linear-time approximate RNA folding by 5'-to-3'dynamic programming and beam search
L Huang, H Zhang, D Deng, K Zhao, K Liu, DA Hendrix, DH Mathews
Bioinformatics 35 (14), i295-i304, 2019
1412019
LinearPartition: linear-time approximation of RNA folding partition function and base-pairing probabilities
H Zhang, L Zhang, DH Mathews, L Huang
Bioinformatics 36 (Supplement_1), i258-i267, 2020
692020
CoV-Seq, a new tool for SARS-CoV-2 genome analysis and visualization: Development and usability study
B Liu, K Liu, H Zhang, L Zhang, Y Bian, L Huang
Journal of medical Internet research 22 (10), e22299, 2020
32*2020
LinearTurboFold: linear-time global prediction of conserved structures for RNA homologs with applications to SARS-CoV-2
S Li, H Zhang, L Zhang, K Liu, B Liu, DH Mathews, L Huang
Proceedings of the National Academy of Sciences 118 (52), e2116269118, 2021
232021
Using relative lines of code to guide automated test generation for python
J Holmes, I Ahmed, C Brindescu, R Gopinath, H Zhang, A Groce
ACM Transactions on Software Engineering and Methodology (TOSEM) 29 (4), 1-38, 2020
172020
ThreshKnot: Thresholded ProbKnot for improved RNA secondary structure prediction
L Zhang, H Zhang, DH Mathews, L Huang
arXiv preprint arXiv:1912.12796, 2019
152019
LazySampling and LinearSampling: fast stochastic sampling of RNA secondary structure with applications to SARS-CoV-2
H Zhang, S Li, L Zhang, DH Mathews, L Huang
Nucleic Acids Research 51 (2), e7-e7, 2022
8*2022
Learning to fold RNAs in linear time
FA Rezaur Rahman Chowdhury, H Zhang, L Huang
bioRxiv, 852871, 2019
62019
LinearCoFold and LinearCoPartition: linear-time algorithms for secondary structure prediction of interacting RNA molecules
H Zhang, S Li, N Dai, L Zhang, DH Mathews, L Huang
Nucleic Acids Research 51 (18), e94-e94, 2023
32023
Linear-time algorithms for RNA structure prediction
H Zhang, L Zhang, K Liu, S Li, DH Mathews, L Huang
RNA Structure Prediction, 15-34, 2022
32022
LinearAlifold: Linear-time consensus structure prediction for RNA alignments
A Malik, L Zhang, M Gautam, N Dai, S Li, H Zhang, DH Mathews, L Huang
Journal of Molecular Biology, 168694, 2024
12024
Deep generative models generate mRNA sequences with enhanced translation capacity and stability
H Zhang, H Liu, Y Xu, Y Liu, J Wang, Y Qin, H Wang, L Ma, Z Xun, TK Lu, ...
bioRxiv, 2024.06. 20.599727, 2024
2024
LinearSankoff: Linear-time Simultaneous Folding and Alignment of RNA Homologs
S Li, N Dai, H Zhang, A Malik, DH Mathews, L Huang
arXiv preprint arXiv:2307.09580, 2023
2023
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