| Algorithm for optimized mRNA design improves stability and immunogenicity H Zhang, L Zhang, A Lin, C Xu, Z Li, K Liu, B Liu, X Ma, F Zhao, H Jiang, ... Nature 621, 396–403, 2023 | 243 | 2023 |
| LinearFold: linear-time approximate RNA folding by 5'-to-3'dynamic programming and beam search L Huang, H Zhang, D Deng, K Zhao, K Liu, DA Hendrix, DH Mathews Bioinformatics 35 (14), i295-i304, 2019 | 157 | 2019 |
| LinearPartition: linear-time approximation of RNA folding partition function and base-pairing probabilities H Zhang, L Zhang, DH Mathews, L Huang Bioinformatics 36 (Supplement_1), i258-i267, 2020 | 77 | 2020 |
| CoV-Seq, a new tool for SARS-CoV-2 genome analysis and visualization: Development and usability study B Liu, K Liu, H Zhang, L Zhang, Y Bian, L Huang Journal of medical Internet research 22 (10), e22299, 2020 | 30 | 2020 |
| LinearTurboFold: linear-time global prediction of conserved structures for RNA homologs with applications to SARS-CoV-2 S Li, H Zhang, L Zhang, K Liu, B Liu, DH Mathews, L Huang Proceedings of the National Academy of Sciences 118 (52), e2116269118, 2021 | 27 | 2021 |
| Using relative lines of code to guide automated test generation for python J Holmes, I Ahmed, C Brindescu, R Gopinath, H Zhang, A Groce ACM Transactions on Software Engineering and Methodology (TOSEM) 29 (4), 1-38, 2020 | 17 | 2020 |
| ThreshKnot: Thresholded ProbKnot for improved RNA secondary structure prediction L Zhang, H Zhang, DH Mathews, L Huang arXiv preprint arXiv:1912.12796, 2019 | 15 | 2019 |
| LazySampling and LinearSampling: fast stochastic sampling of RNA secondary structure with applications to SARS-CoV-2 H Zhang, S Li, L Zhang, DH Mathews, L Huang Nucleic Acids Research 51 (2), e7-e7, 2022 | 6 | 2022 |
| Linear-time algorithms for RNA structure prediction H Zhang, L Zhang, K Liu, S Li, DH Mathews, L Huang RNA Structure Prediction, 15-34, 2022 | 6 | 2022 |
| LinearCoFold and LinearCoPartition: linear-time algorithms for secondary structure prediction of interacting RNA molecules H Zhang, S Li, N Dai, L Zhang, DH Mathews, L Huang Nucleic Acids Research 51 (18), e94-e94, 2023 | 4 | 2023 |
| LinearTurboFold S Li, H Zhang, L Zhang, K Liu, B Liu, DH Mathews, L Huang Proceedings of the National Academy of Sciences of the United States of …, 2021 | 4 | 2021 |
| CoV-Seq: SARS-CoV-2 Genome Analysis and Visualization B Liu, K Liu, H Zhang, L Zhang, Y Bian, L Huang bioRxiv, 2020.05. 01.071050, 2020 | 4 | 2020 |
| LinearSampling: Linear-time stochastic sampling of RNA secondary structure with applications to SARS-CoV-2 H Zhang, L Zhang, S Li, D Mathews, L Huang | 4 | 2020 |
| Learning to fold RNAs in linear time FA Rezaur Rahman Chowdhury, H Zhang, L Huang bioRxiv, 852871, 2019 | 4 | 2019 |
| Learning to fold RNAs in linear time FARR Chowdhury, H Zhang, L Huang bioRxiv, 852871, 2019 | 4 | 2019 |
| LinearAlifold: Linear-time consensus structure prediction for RNA alignments A Malik, L Zhang, M Gautam, N Dai, S Li, H Zhang, DH Mathews, L Huang Journal of Molecular Biology, 168694, 2024 | 2 | 2024 |
| ThreshKnot: Thresholded ProbKnot for Improved RNA Secondary Structure Prediction. arXiv 2020 L Zhang, H Zhang, DH Mathews, L Huang arXiv preprint arXiv:1912.12796, 0 | 2 | |
| ThreshKnot: Thresholded probknot for improved RNA secondary structure prediction. arXiv [Preprint](2019) L Zhang, H Zhang, DH Mathews, L Huang | 2 | |
| LinearSampling: Linear-time stochastic sampling of RNA secondary structure with applications to SARS-CoV-2. bioRxiv [Preprint](2020) H Zhang, L Zhang, S Li, D Mathews, L Huang | 2 | |
| Systems and Methods for Sequence Design H Zhang, L Zhang, Z Li, K Liu, B Liu, L Huang US Patent App. 18/795,898, 2024 | | 2024 |
