| The mzIdentML data standard version 1.2, supporting advances in proteome informatics JA Vizcaíno, G Mayer, S Perkins, H Barsnes, M Vaudel, Y Perez-Riverol, ... Molecular & cellular proteomics 16 (7), 1275-1285, 2017 | 61 | 2017 |
| Toward increased reliability, transparency, and accessibility in cross-linking mass spectrometry A Leitner, AMJJ Bonvin, CH Borchers, RJ Chalkley, J Chamot-Rooke, ... Structure 28 (11), 1259-1268, 2020 | 48 | 2020 |
| JSBML 1.0: providing a smorgasbord of options to encode systems biology models N Rodriguez, A Thomas, L Watanabe, IY Vazirabad, V Kofia, HF Gómez, ... Bioinformatics 31 (20), 3383-3386, 2015 | 46 | 2015 |
| OpenPepXL: An open-source tool for sensitive identification of cross-linked peptides in XL-MS E Netz, TMH Dijkstra, T Sachsenberg, L Zimmermann, M Walzer, ... Molecular & Cellular Proteomics 19 (12), 2157-2168, 2020 | 11 | 2020 |
| Proceedings of the EuBIC-MS 2020 Developers’ Meeting C Ashwood, W Bittremieux, EW Deutsch, NT Doncheva, V Dorfer, ... EuPA Open Proteomics 24, 1-6, 2020 | 6 | 2020 |
| OpenMS for open source analysis of mass spectrometric data O Alka, T Sachsenberg, L Bichmann, J Pfeuffer, H Weisser, S Wein, ... PeerJ Preprints 7, e27766v1, 2019 | 4 | 2019 |
| The phosphodiesterase inhibitor IBMX blocks the potassium channel THIK-1 from the extracellular side X Zou, LJ Conrad, K Koschinsky, G Schlichthörl, R Preisig-Müller, E Netz, ... Molecular pharmacology 98 (2), 143-155, 2020 | 3 | 2020 |
| OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data J Pfeuffer, C Bielow, S Wein, K Jeong, E Netz, A Walter, O Alka, L Nilse, ... Nature Methods, 1-3, 2024 | 2 | 2024 |
| OpenMS and KNIME for Mass Spectrometry Data Processing O Alka, T Sachsenberg, L Bichmann, J Pfeuffer, H Weisser, S Wein, ... | 1 | 2020 |
| CLAUDIO: automated structural analysis of cross-linking data A Röhl, E Netz, O Kohlbacher, H Elhabashy Bioinformatics 40 (4), btae146, 2024 | | 2024 |
| Improved Cross-Linking Mass Spectrometry Algorithms for Probing Protein Structures and Interactions E Netz Universität Tübingen, 2023 | | 2023 |
| OpenMS 3 expands the frontiers of open-source computational mass spectrometry T Sachsenberg, J Pfeuffer, C Bielow, S Wein, K Jeong, E Netz, A Walter, ... | | 2023 |
| CLAUDIO: An automated cross-linking data analysis and validation workflow A Röhl, E Netz, O Kohlbacher, H Elhabashy 11th Symposium on Structural Proteomics (SSP 2023), 2023 | | 2023 |
| XLEC: Large-scale prediction and modeling of protein-protein interaction using sequence co-evolution and cross-linking data H Elhabashy, E Netz, O Kohlbacher 11th Symposium on Structural Proteomics (SSP 2023), 2023 | | 2023 |
| A Novel Computational Approach for Simultaneous Identification of Protein-RNA and Protein-DNA Interactions from XL-MS Data T Sachsenberg, A Stützer, A Chernev, E Netz, T Dijkstra, H Urlaub, ... | | 2019 |
| OpenPepXL: Sensitive, Comprehensive Identification and Quantification of Protein-Protein Cross-Links E Netz, T Dijkstra, T Sachsenberg, O Kohlbacher 67th ASMS Conference on Mass Spectrometry and Allied Topics, 2019 | | 2019 |
| OpenPepXL: a versatile and sensitive XL-MS identification tool E Netz, TMH Dijkstra, O Kohlbacher 8th Symposium on Structural Proteomics (8SSP), 35, 2018 | | 2018 |
| OpenProXL: a Fast and Versatile XL-MS Identification Tool E Netz, T Sachsenberg, CJ Gloeckner, O Kohlbacher 65th ASMS Conference on Mass Spectrometry and Allied Topics, 2017 | | 2017 |
