| CTCF: master weaver of the genome JE Phillips, VG Corces Cell 137 (7), 1194-1211, 2009 | 1899 | 2009 |
| Architectural protein subclasses shape 3D organization of genomes during lineage commitment JE Phillips-Cremins, MEG Sauria, A Sanyal, TI Gerasimova, BR Lajoie, ... Cell 153 (6), 1281-1295, 2013 | 1287 | 2013 |
| New insights into the genetic etiology of Alzheimer’s disease and related dementias C Bellenguez, F Küçükali, IE Jansen, L Kleineidam, S Moreno-Grau, ... Nature genetics 54 (4), 412-436, 2022 | 1246 | 2022 |
| The 4D nucleome project J Dekker, AS Belmont, M Guttman, VO Leshyk, JT Lis, S Lomvardas, ... Nature 549 (7671), 219-226, 2017 | 690 | 2017 |
| On the existence and functionality of topologically associating domains JA Beagan, JE Phillips-Cremins Nature genetics 52 (1), 8-16, 2020 | 336 | 2020 |
| YY1 and CTCF orchestrate a 3D chromatin looping switch during early neural lineage commitment JA Beagan, MT Duong, KR Titus, L Zhou, Z Cao, J Ma, CV Lachanski, ... Genome research 27 (7), 1139-1152, 2017 | 290 | 2017 |
| Engineering graded tissue interfaces JE Phillips, KL Burns, JM Le Doux, RE Guldberg, AJ García Proceedings of the National Academy of Sciences 105 (34), 12170-12175, 2008 | 266 | 2008 |
| TDP-43 loss and ALS-risk SNPs drive mis-splicing and depletion of UNC13A AL Brown, OG Wilkins, MJ Keuss, SE Hill, M Zanovello, WC Lee, ... Nature 603 (7899), 131-137, 2022 | 260 | 2022 |
| Postmortem cortex samples identify distinct molecular subtypes of ALS: retrotransposon activation, oxidative stress, and activated glia OH Tam, NV Rozhkov, R Shaw, D Kim, I Hubbard, S Fennessey, N Propp, ... Cell reports 29 (5), 1164-1177. e5, 2019 | 254 | 2019 |
| Human mesenchymal stem cell differentiation on self-assembled monolayers presenting different surface chemistries JE Phillips, TA Petrie, FP Creighton, AJ García Acta biomaterialia 6 (1), 12-20, 2010 | 233 | 2010 |
| Chromatin insulators: linking genome organization to cellular function JE Phillips-Cremins, VG Corces Molecular cell 50 (4), 461-474, 2013 | 232 | 2013 |
| The importance of the whole: topological data analysis for the network neuroscientist AE Sizemore, JE Phillips-Cremins, R Ghrist, DS Bassett Network Neuroscience 3 (3), 656-673, 2019 | 204 | 2019 |
| Disease-associated short tandem repeats co-localize with chromatin domain boundaries JH Sun, L Zhou, DJ Emerson, SA Phyo, KR Titus, W Gong, TG Gilgenast, ... Cell 175 (1), 224-238. e15, 2018 | 202 | 2018 |
| Chromatin structure dynamics during the mitosis-to-G1 phase transition H Zhang, DJ Emerson, TG Gilgenast, KR Titus, Y Lan, P Huang, D Zhang, ... Nature 576 (7785), 158-162, 2019 | 196 | 2019 |
| Glucocorticoid-induced osteogenesis is negatively regulated by Runx2/Cbfa1 serine phosphorylation JE Phillips, CA Gersbach, AM Wojtowicz, AJ García Journal of cell science 119 (3), 581-591, 2006 | 183 | 2006 |
| The BET protein BRD2 cooperates with CTCF to enforce transcriptional and architectural boundaries SC Hsu, TG Gilgenast, CR Bartman, CR Edwards, AJ Stonestrom, ... Molecular cell 66 (1), 102-116. e7, 2017 | 143 | 2017 |
| Virus-based gene therapy strategies for bone regeneration JE Phillips, CA Gersbach, AJ García Biomaterials 28 (2), 211-229, 2007 | 139 | 2007 |
| Three-dimensional genome restructuring across timescales of activity-induced neuronal gene expression JA Beagan, ED Pastuzyn, LR Fernandez, MH Guo, K Feng, KR Titus, ... Nature neuroscience 23 (6), 707-717, 2020 | 134 | 2020 |
| Detecting hierarchical genome folding with network modularity HK Norton, DJ Emerson, H Huang, J Kim, KR Titus, S Gu, DS Bassett, ... Nature methods 15 (2), 119-122, 2018 | 132 | 2018 |
| Local genome topology can exhibit an incompletely rewired 3D-folding state during somatic cell reprogramming JA Beagan, TG Gilgenast, J Kim, Z Plona, HK Norton, G Hu, SC Hsu, ... Cell stem cell 18 (5), 611-624, 2016 | 131 | 2016 |
Jonathan A BeaganYale UniversityVerified email at yale.edu
