| A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping SSP Rao, MH Huntley, NC Durand, EK Stamenova, ID Bochkov, ... Cell 159 (7), 1665-1680, 2014 | 8263 | 2014 |
| Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes AL Sanborn, SSP Rao, SC Huang, NC Durand, MH Huntley, AI Jewett, ... Proceedings of the National Academy of Sciences 112 (47), E6456-E6465, 2015 | 1766 | 2015 |
| Cohesin loss eliminates all loop domains SSP Rao, SC Huang, BG St Hilaire, JM Engreitz, EM Perez, ... Cell 171 (2), 305-320. e24, 2017 | 1764 | 2017 |
| Structural insights into µ-opioid receptor activation W Huang, A Manglik, AJ Venkatakrishnan, T Laeremans, EN Feinberg, ... Nature 524 (7565), 315-321, 2015 | 938 | 2015 |
| The energetics and physiological impact of cohesin extrusion L Vian, A Pękowska, SSP Rao, KR Kieffer-Kwon, S Jung, L Baranello, ... Cell 173 (5), 1165-1178. e20, 2018 | 565 | 2018 |
| Deletion of DXZ4 on the human inactive X chromosome alters higher-order genome architecture EM Darrow, MH Huntley, O Dudchenko, EK Stamenova, NC Durand, ... Proceedings of the National Academy of Sciences 113 (31), E4504-E4512, 2016 | 295 | 2016 |
| ESCO1 and CTCF enable formation of long chromatin loops by protecting cohesinSTAG1 from WAPL G Wutz, R Ladurner, BG St Hilaire, RR Stocsits, K Nagasaka, B Pignard, ... Elife 9, e52091, 2020 | 142 | 2020 |
| Simple biochemical features underlie transcriptional activation domain diversity and dynamic, fuzzy binding to Mediator AL Sanborn, BT Yeh, JT Feigerle, CV Hao, RJL Townshend, ... Elife 10, e68068, 2021 | 133 | 2021 |
| Analysis of Hi-C data using SIP effectively identifies loops in organisms from C. elegans to mammals MJ Rowley, A Poulet, MH Nichols, BJ Bixler, AL Sanborn, EA Brouhard, ... Genome research 30 (3), 447-458, 2020 | 86 | 2020 |
| Integrated intracellular organization and its variations in human iPS cells MP Viana, J Chen, TA Knijnenburg, R Vasan, C Yan, JE Arakaki, M Bailey, ... Nature 613 (7943), 345-354, 2023 | 81 | 2023 |
| Deep learning for semantic similarity A Sanborn, J Skryzalin CS224d: Deep Learning for Natural Language Processing Stanford, CA, USA …, 2015 | 60 | 2015 |
| Proof of Han's hook expansion conjecture K Carde, J Loubert, A Potechin, A Sanborn arXiv preprint arXiv:0808.0928, 2008 | 10 | 2008 |
| Author correction: Structural insights into μ-opioid receptor activation W Huang, A Manglik, AJ Venkatakrishnan, T Laeremans, EN Feinberg, ... Nature 584 (7820), E16-E16, 2020 | 8 | 2020 |
| Methods and compositions for altering function and structure of chromatin loops and/or domains EL Aiden, ES Lander, S Rao, SC Huang, AL Sanborn, NC Durand, ... US Patent 11,214,800, 2022 | 7 | 2022 |
| Mapping variation in the morphological landscape of human cells with optical pooled CRISPRi screening RLDLR Labitigan Stanford University, 2024 | 6 | 2024 |
| ATOM-1: A foundation model for RNA structure and function built on chemical mapping data N Boyd, BM Anderson, B Townshend, R Chow, CJ Stephens, R Rangan, ... bioRxiv, 2023.12. 13.571579, 2023 | 4 | 2023 |
| Chromatin Extrusion Explains Key Features of Loop and Domain Formation in Wild‐type and Engineered Genomes A Sanborn, S Rao, SC Huang, N Durand, M Huntley, A Jewett, I Bochkov, ... The FASEB Journal 30, 588.1-588.1, 2016 | 4 | 2016 |
| Systems and methods to identify transcription factor activation domains and uses thereof RD Kornberg, A Sanborn, B Yeh US Patent 11,732,381, 2023 | | 2023 |
| Methods and compositions for altering function and structure of chromatin loops and/or domains EL Aiden, ES Lander, S Rao, SC Huang, AL Sanborn, NC Durand, ... US Patent App. 17/398,951, 2022 | | 2022 |
| Prediction and Mechanistic Dissection of Transcriptional Activation Domains Using Deep Learning and Pooled Screening AL Sanborn Stanford University, 2021 | | 2021 |
