| Integrative single-cell RNA-seq and ATAC-seq analysis of human developmental hematopoiesis AM Ranzoni, A Tangherloni, I Berest, SG Riva, B Myers, PM Strzelecka, ... Cell stem cell 28 (3), 472-487. e7, 2021 | 231 | 2021 |
| SMaSH: a scalable, general marker gene identification framework for single-cell RNA-sequencing ME Nelson, SG Riva, A Cvejic BMC bioinformatics 23 (1), 328, 2022 | 18 | 2022 |
| SMGen: a generator of synthetic models of biochemical reaction networks SG Riva, P Cazzaniga, MS Nobile, S Spolaor, L Rundo, D Besozzi, ... Symmetry 14 (1), 119, 2022 | 10 | 2022 |
| Numerical solutions to linear transfer problems of polarized radiation-III. Parallel preconditioned Krylov solver tailored for modeling PRD effects P Benedusi, G Janett, S Riva, R Krause, L Belluzzi Astronomy & Astrophysics 664, A197, 2022 | 9 | 2022 |
| SMaSH: A scalable, general marker gene identification framework for single-cell RNA sequencing and Spatial Transcriptomics ME Nelson, SG Riva, A Cvejic bioRxiv, 2021.04. 08.438978, 2021 | 8 | 2021 |
| Integration of multiple scRNA-seq datasets on the autoencoder latent space SG Riva, P Cazzaniga, A Tangherloni 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2021 | 7 | 2021 |
| The impact of representation on the optimization of marker panels for single-cell RNA data A Tangherloni, SG Riva, S Spolaor, D Besozzi, MS Nobile, P Cazzaniga 2021 IEEE Congress on Evolutionary Computation (CEC), 1423-1430, 2021 | 7 | 2021 |
| GTAC enables parallel genotyping of multiple genomic loci with chromatin accessibility profiling in single cells S Turkalj, NA Jakobsen, A Groom, M Metzner, SG Riva, ER Gür, ... Cell Stem Cell 30 (5), 722-740. e11, 2023 | 6 | 2023 |
| Integrative Single-cell RNA-Seq and ATAC-Seq Analysis of Human Developmental Haematopoiesis A Maria Ranzoni, A Tangherloni, I Berest, SG Riva, B Myers, ... BioRxiv, 2020.05. 06.080259, 2020 | 6 | 2020 |
| Structural and non-coding variants increase the diagnostic yield of clinical whole genome sequencing for rare diseases AT Pagnamenta, C Camps, E Giacopuzzi, JM Taylor, M Hashim, ... Genome medicine 15 (1), 94, 2023 | 5 | 2023 |
| Multi-objective optimization for marker panel identification in single-cell data A Tangherloni, SG Riva, B Myers, P Cazzaniga 2022 IEEE Conference on Computational Intelligence in Bioinformatics and …, 2022 | 3 | 2022 |
| MLL-AF4 cooperates with PAF1 and FACT to drive high-density enhancer interactions in leukemia NT Crump, AL Smith, L Godfrey, AM Dopico-Fernandez, N Denny, ... Nature Communications 14 (1), 5208, 2023 | 2 | 2023 |
| Active regulatory elements recruit cohesin to establish cell-specific chromatin domains. E Georgiades, CL Harrold, N Roberts, M Kassouf, SG Riva, EL Sanders, ... bioRxiv, 2023.10. 13.562171, 2023 | 2 | 2023 |
| SMGen: A generator of synthetic models of biochemical reaction networks SG Riva, P Cazzaniga, MS Nobile, S Spolaor, L Rundo, D Besozzi, ... bioRxiv, 2021.07. 29.454343, 2021 | 2 | 2021 |
| MAGNETO: Cell type marker panel generator from single-cell transcriptomic data A Tangherloni, SG Riva, B Myers, FM Buffa, P Cazzaniga Journal of Biomedical Informatics 147, 104510, 2023 | 1 | 2023 |
| IRX3 Oncogene Activation in T-ALL through Enhancer Hijacking Caused By fto Intron 8 Deletions S Rahman, N Farah, J Demeulemeester, J R Costa, G Bloye, D O'Connor, ... Blood 140 (Supplement 1), 1009-1010, 2022 | 1 | 2022 |
| Predicting and characterizing legal claims of hospitals with computational intelligence: the legal and ethical implications C Gallese, C Fuchs, SG Riva, E Foglia, F Schettini, L Ferrario, E Falletti, ... 2022 IEEE Conference on Computational Intelligence in Bioinformatics and …, 2022 | 1 | 2022 |
| A Deep Learning Pipeline for the Automatic cell type Assignment of scRNA-seq Data SG Riva, B Myers, P Cazzaniga, A Tangherloni 2022 IEEE Conference on Computational Intelligence in Bioinformatics and …, 2022 | 1 | 2022 |
| SMGen: a generator of synthetic models of biochemical reaction networks. Symmetry. 2022; 14: 119 S Riva, P Cazzaniga, M Nobile, S Spolaor, L Rundo, D Besozzi, ... s Note: MDPI stays neutral with regard to jurisdictional claims in published …, 2022 | 1 | 2022 |
| A Multiomic Single-Cell Atlas of Human Myelopoiesis Reveals Cellular and Molecular Drivers of Immunomodulatory Drug-Induced Neutropenia C Simoglou Karali, S Riva, SA Clark, S Wen, N Sousos, E Louka, ER Gür, ... Blood 142 (Supplement 1), 935-935, 2023 | | 2023 |
