TopDom: an efficient and deterministic method for identifying topological domains in genomes H Shin, Y Shi, C Dai, H Tjong, K Gong, F Alber, XJ Zhou Nucleic acids research 44 (7), e70-e70, 2016 | 272 | 2016 |
Physical tethering and volume exclusion determine higher-order genome organization in budding yeast H Tjong, K Gong, L Chen, F Alber Genome research 22 (7), 1295-1305, 2012 | 232 | 2012 |
Population-based 3D genome structure analysis reveals driving forces in spatial genome organization H Tjong, W Li, R Kalhor, C Dai, S Hao, K Gong, Y Zhou, H Li, XJ Zhou, ... Proceedings of the National Academy of Sciences 113 (12), E1663-E1672, 2016 | 187 | 2016 |
Molecular dynamics studies on the interactions of PTP1B with inhibitors: from the first phosphate-binding site to the second one JF Wang, K Gong, DQ Wei, YX Li, KC Chou Protein Engineering, Design & Selection 22 (6), 349-355, 2009 | 116 | 2009 |
The three-dimensional genome organization of Drosophila melanogaster through data integration Q Li, H Tjong, X Li, K Gong, XJ Zhou, I Chiolo, F Alber Genome biology 18, 1-22, 2017 | 93 | 2017 |
Comprehensive characterization of neutrophil genome topology Y Zhu, K Gong, M Denholtz, V Chandra, MP Kamps, F Alber, C Murre Genes & development 31 (2), 141-153, 2017 | 90 | 2017 |
Hi-Corrector: a fast, scalable and memory-efficient package for normalizing large-scale Hi-C data W Li, K Gong, Q Li, F Alber, XJ Zhou Bioinformatics 31 (6), 960-962, 2015 | 82 | 2015 |
Producing genome structure populations with the dynamic and automated PGS software N Hua, H Tjong, H Shin, K Gong, XJ Zhou, F Alber Nature protocols 13 (5), 915-926, 2018 | 59 | 2018 |
A simple and efficient procedure to enhance artemisinin content in Artemisia annua L. by seeding to salinity stress Z Qian, K Gong, L Zhang, J Lv, F Jing, Y Wang, S Guan, G Wang, K Tang African Journal of Biotechnology 6 (12), 2007 | 58 | 2007 |
Binding mechanism of H5N1 influenza virus neuraminidase with ligands and its implication for drug design K Gong, L Li, JF Wang, F Cheng, DQ Wei, KC Chou Medicinal Chemistry 5 (3), 242-249, 2009 | 56 | 2009 |
Comparative 3D genome structure analysis of the fission and the budding yeast K Gong, H Tjong, XJ Zhou, F Alber PLoS One 10 (3), e0119672, 2015 | 27 | 2015 |
Structural flexibility and interactions of PTP1B’s S-loop JF Wang, K Gong, DQ Wei, YX Li Interdisciplinary Sciences: Computational Life Sciences 1, 214-219, 2009 | 8 | 2009 |
The structure of phospholamban and its MD simulations B Tang, K Gong, JF Wang, YX Li, DQ Wei Chinese Science Bulletin 55, 1619-1624, 2010 | 6 | 2010 |
Population-based structure modeling reveals key roles of nuclear microenviroment in gene functions A Yildirim, N Hua, L Boninsegna, G Polles, K Gong, S Hao, W Li, XJ Zhou, ... | 4 | 2021 |
Mapping the nuclear microenvironment of genes at a genome-wide scale A Yildirim, N Hua, L Boninsegna, G Polles, K Gong, S Hao, W Li, XJ Zhou, ... BioRxiv, 2021.07. 11.451976, 2021 | 4 | 2021 |
PGS: a dynamic and automated population-based genome structure software N Hua, H Tjong, H Shin, K Gong, XJ Zhou, F Alber bioRxiv, 103358, 2017 | 3 | 2017 |
Evaluating the role of the nuclear microenvironment in gene function by population-based modeling A Yildirim, N Hua, L Boninsegna, Y Zhan, G Polles, K Gong, S Hao, W Li, ... Nature Structural & Molecular Biology 30 (8), 1193-1206, 2023 | 2 | 2023 |
The 3D genome organization of Drosophila melanogaster through data integration Q Li, H Tjong, X Li, K Gong, XJ Zhou, I Chiolo, F Alber bioRxiv, 099911, 2017 | 2 | 2017 |
3D Modeling of Eukaryotic Genomes K Gong University of Southern California, 2015 | | 2015 |
3D GENOME UNIVERSE OF THE BUDDING YEAST H Tjong, K Gong, L Chen, F Alber | | |