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Sofia Kyriazopoulou Panagiotopoulou
Sofia Kyriazopoulou Panagiotopoulou
ArsenalBio, Illumina, 10x Genomics, Stanford University Department of Computer Science
Verified email at alumni.stanford.edu
Title
Cited by
Cited by
Year
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
137752012
Predicting splicing from primary sequence with deep learning
K Jaganathan, SK Panagiotopoulou, JF McRae, SF Darbandi, D Knowles, ...
Cell 176 (3), 535-548. e24, 2019
14592019
Haplotyping germline and cancer genomes with high-throughput linked-read sequencing
GXY Zheng, BT Lau, M Schnall-Levin, M Jarosz, JM Bell, CM Hindson, ...
Nature biotechnology 34 (3), 303-311, 2016
8112016
Multi-platform discovery of haplotype-resolved structural variation in human genomes
MJP Chaisson, AD Sanders, X Zhao, A Malhotra, D Porubsky, T Rausch, ...
Nature communications 10 (1), 1784, 2019
7432019
Extensive sequencing of seven human genomes to characterize benchmark reference materials
JM Zook, D Catoe, J McDaniel, L Vang, N Spies, A Sidow, Z Weng, Y Liu, ...
Scientific data 3 (1), 1-26, 2016
6602016
Extensive variation in chromatin states across humans
M Kasowski, S Kyriazopoulou-Panagiotopoulou, F Grubert, JB Zaugg, ...
Science 342 (6159), 750-752, 2013
4082013
Resolving the full spectrum of human genome variation using Linked-Reads
P Marks, S Garcia, AM Barrio, K Belhocine, J Bernate, R Bharadwaj, ...
Genome research 29 (4), 635-645, 2019
2022019
Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements
A Kundaje, S Kyriazopoulou-Panagiotopoulou, M Libbrecht, CL Smith, ...
Genome research 22 (9), 1735-1747, 2012
2002012
Systems and methods for determining structural variation and phasing using variant call data
S Kyriazopoulou-Panagiotopoulou, P Marks, M Schnall-Levin, X Zheng, ...
US Patent 10,854,315, 2020
1232020
Human-specific tandem repeat expansion and differential gene expression during primate evolution
A Sulovari, R Li, PA Audano, D Porubsky, MR Vollger, GA Logsdon, ...
Proceedings of the National Academy of Sciences 116 (46), 23243-23253, 2019
922019
Using 1ng of DNA to detect haplotype phasing and gene fusions from whole exome sequencing of cancer cell lines
M Jarosz, M Schnall-Levin, GXY Zheng, P Marks, ...
Cancer Research 75 (15_Supplement), 4742-4742, 2015
622015
Reconstruction of genealogical relationships with applications to Phase III of HapMap
S Kyriazopoulou-Panagiotopoulou, D Kashef Haghighi, SJ Aerni, ...
Bioinformatics 27 (13), i333-i341, 2011
232011
Deep learning-based splice site classification
K Jaganathan, F Kai-How, SK PANAGIOTOPOULOU, JF McRAE
US Patent 11,488,009, 2022
92022
Aberrant splicing detection using convolutional neural networks (CNNs)
K Jaganathan, F Kai-How, SK PANAGIOTOPOULOU, JF McRAE
US Patent 11,397,889, 2022
62022
Systems and methods for determining the integrity of test strings with respect to a reference genome
S Kyriazopoulou-Panagiotopoulou, P Marks
US Patent 10,366,777, 2019
42019
Control variates as screening functions
S Kyriazopoulou-Panagiotopoulou, I Kontoyiannis, SP Meyn
Proceedings of the 3rd International Conference on Performance Evaluation …, 2008
32008
Deep learning-based pathogenicity classifier for promoter single nucleotide variants (pSNVs)
SK PANAGIOTOPOULOU, F Kai-How
US Patent 11,861,491, 2024
22024
Systems and methods for determining structural variation and phasing using variant call data
S Kyriazopoulou-Panagiotopoulou, P Marks, M Schnall-Levin, X Zheng, ...
US Patent App. 17/098,139, 2021
12021
Splicing site classification using neural networks
K Jaganathan, F Kai-How, JF McRAE, SK PANAGIOTOPOULOU
US Patent App. 18/478,763, 2024
2024
Splicing Site Classification Using Neural Networks
K Jaganathan, F Kai-How, JF McRAE, SK PANAGIOTOPOULOU
US Patent App. 17/874,158, 2024
2024
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