| Community-led, integrated, reproducible multi-omics with anvi’o AM Eren, E Kiefl, A Shaiber, I Veseli, SE Miller, MS Schechter, I Fink, ... Nature microbiology 6 (1), 3-6, 2021 | 432 | 2021 |
| Biosynthetic potential of the global ocean microbiome L Paoli, HJ Ruscheweyh, CC Forneris, F Hubrich, S Kautsar, A Bhushan, ... Nature 607 (7917), 111-118, 2022 | 164 | 2022 |
| Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean TO Delmont, M Gaia, DD Hinsinger, P Frémont, C Vanni, ... Cell Genomics 2 (5), 2022 | 80 | 2022 |
| Community-led, integrated, reproducible multi-omics with anvi’o. Nat Microbiol 6: 3–6 AM Eren, E Kiefl, A Shaiber, I Veseli, SE Miller, MS Schechter, I Fink, ... | 73 | 2021 |
| Functional repertoire convergence of distantly related eukaryotic plankton lineages revealed by genome-resolved metagenomics TO Delmont, M Gaia, DD Hinsinger, P Fremont, AF Guerra, AM Eren, ... BioRxiv, 2020.10. 15.341214, 2020 | 49 | 2020 |
| Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments HJ Ruscheweyh, A Milanese, L Paoli, N Karcher, Q Clayssen, MI Keller, ... Microbiome 10 (1), 212, 2022 | 25 | 2022 |
| mOTUs: profiling taxonomic composition, transcriptional activity and strain populations of microbial communities HJ Ruscheweyh, A Milanese, L Paoli, A Sintsova, DR Mende, G Zeller, ... Current Protocols 1 (8), e218, 2021 | 14 | 2021 |
| Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition C Belser, J Poulain, K Labadie, F Gavory, A Alberti, J Guy, Q Carradec, ... Scientific Data 10 (1), 326, 2023 | 13 | 2023 |
| Community-led, integrated, reproducible multi-omics with anvi’o. Nat Microbiol. 2021; 6: 3–6 AM Eren, E Kiefl, A Shaiber, I Veseli, SE Miller, MS Schechter, I Fink, ... | 10 | |
| The rumen microbiome inhibits methane formation through dietary choline supplementation Y Li, M Kreuzer, Q Clayssen, MO Ebert, HJ Ruscheweyh, S Sunagawa, ... Scientific Reports 11 (1), 21761, 2021 | 6 | 2021 |
| Tara Pacific 16S rRNA data analysis release HJ Ruscheweyh, G Salazar, J Poulain, C Belser, Q Clayssen, BCC Hume, ... Zenodo, 2020 | 6 | 2020 |
| Tara Pacific ITS2 Symbiodiniaceae data release version 1 BCC Hume, J Poulain, S Pesant, C Belser, HJ Ruscheweyh, D Forcioli, ... Zenodo, 2020 | 5 | 2020 |
| Reference genome-independent taxonomic profiling of microbiomes with mOTUs3 HJ Ruscheweyh, A Milanese, L Paoli, N Karcher, Q Clayssen, MI Metzger, ... bioRxiv, 2021.04. 20.440600, 2021 | 3 | 2021 |
| Transient suppression of bacterial populations associated with gut health is critical in success of exclusive enteral nutrition for children with crohn’s disease J Runde, I Veseli, EC Fogarty, AR Watson, Q Clayssen, M Yosef, ... Journal of Crohn's and Colitis 17 (7), 1103-1113, 2023 | 2 | 2023 |
| Tara Pacific V9 18S rDNA metabarcoding dataset F Mahé, N Henry, C Berney, J Poulain, S Romac, G Bourdin, ... Zenodo, 2021 | 2 | 2021 |
| mOTUs3: An updated tool for microbiome profiling of diverse samples without reference genomes HJ Ruscheweyh, A Milanese, L Paoli, N Karcher, Q Clayssen, MI Keller, ... | | 2023 |
| Microbiomics boosts mining of natural products from the ocean L Paoli, HJ Ruscheweyh, CC Forneris, F Hubrich, S Kautsar, A Bhushan, ... | | 2023 |
| TARA Pacific CTAX colony morphological annotations release version 1_1 G Mitushasi, S Algostini, B Hume, Y Kitano, J Poulain, S Pesant, C Belser, ... Zenodo, 2022 | | 2022 |
| Tara Pacific 18S-based coral host genetic analysis data release version 1 BCC Hume, J Poulain, S Pesant, C Belser, HJ Ruscheweyh, E Boissin, ... Zenodo, 2020 | | 2020 |
Shinichi SunagawaETH Zurich; Swiss Institute of BioinformaticsVerified email at ethz.ch
