Dmitry Ivankov

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Alexei FinkelsteinИнститут белка РАНVerified email at vega.protres.ru
Natalya BogatyrevaPostdoc at CRG, BarcelonaVerified email at crg.eu
Oxana GalzitskayaInstitute of Protein Research, Group of BioinformaticsVerified email at vega.protres.ru
Dinara UsmanovaColumbia UniversityVerified email at cumc.columbia.edu
Ekaterina PutintsevaIST AustriaVerified email at ist.ac.at
Dmitrij FrishmanProfessor of Bioinformatics, Technische Universität MünchenVerified email at wzw.tum.de
Eric AlmProfessor of Biological Engineering, MITVerified email at mit.edu
David BakerUniversity of WashingtonVerified email at uw.edu
Kevin PlaxcoProfessor of Chemistry, University of California Santa BarbaraVerified email at chem.ucsb.edu
Onuralp SoylemezHarvard Medical SchoolVerified email at broadinstitute.org
Dan S TawfikWeizmann Institue of ScienceVerified email at weizmann.ac.il
Vlasov PKInstitute of Science and Technology Austria (IST Austria)Verified email at ist.ac.at
Sharonov GeorgePirogov Russian National Research University, Moscow, RussiaVerified email at nmr.ru
Guillaume FilionUniversity of Toronto ScarboroughVerified email at utoronto.ca
Pavel PevznerProfessor of Computer Science, University of California at San DiegoVerified email at eng.ucsd.edu
Samuel H PayneAssociate Professor, Brigham Young UniversityVerified email at byu.edu
Inna PovolotskayaVeltishev Research and Clinical Institute for PediatricsVerified email at pedklin.ru
Peter HönigschmidDepartment of Genome-Oriented Bioinformatics, TUM, WeihenstephanVerified email at wzw.tum.de
Michael Y. GalperinNCBI, NLM, National Institutes of HealthVerified email at ncbi.nlm.nih.gov
si wuuniversity of oklahomaVerified email at ou.edu

Dmitry Ivankov

Assistant Professor, Skolkovo Institute of Science and Technology

Verified email at skoltech.ru

Protein Folding Evolutionary biology Signal Peptides MS Proteomics


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Contact order revisited: influence of protein size on the folding rate DN Ivankov, SO Garbuzynskiy, E Alm, KW Plaxco, D Baker, AV Finkelstein Protein science 12 (9), 2057-2062, 2003	415	2003
Local fitness landscape of the green fluorescent protein KS Sarkisyan, DA Bolotin, MV Meer, DR Usmanova, AS Mishin, ... Nature 533 (7603), 397-401, 2016	354	2016
Prediction of protein folding rates from the amino acid sequence-predicted secondary structure DN Ivankov, AV Finkelstein Proceedings of the National Academy of Sciences 101 (24), 8942-8944, 2004	229	2004
Chain length is the main determinant of the folding rate for proteins with three‐state folding kinetics OV Galzitskaya, SO Garbuzynskiy, DN Ivankov, AV Finkelstein Proteins: Structure, Function, and Bioinformatics 51 (2), 162-166, 2003	170	2003
Folding nuclei in proteins OV Galzitskaya, DN Ivankov, AV Finkelstein Molecular Biology 35 (4), 605-613, 2001	101	2001
Coupling between properties of the protein shape and the rate of protein folding DN Ivankov, NS Bogatyreva, MY Lobanov, OV Galzitskaya PloS one 4 (8), e6476, 2009	76	2009
Golden triangle for folding rates of globular proteins SO Garbuzynskiy, DN Ivankov, NS Bogatyreva, AV Finkelstein Proceedings of the National Academy of Sciences 110 (1), 147-150, 2013	73	2013
Golden triangle for folding rates of globular proteins SO Garbuzynskiy, DN Ivankov, NS Bogatyreva, AV Finkelstein Proceedings of the National Academy of Sciences 110 (1), 147-150, 2013	73	2013
KineticDB: a database of protein folding kinetics NS Bogatyreva, AA Osypov, DN Ivankov Nucleic Acids Research 37 (suppl_1), D342-D346, 2009	71	2009
An experimental assay of the interactions of amino acids from orthologous sequences shaping a complex fitness landscape VO Pokusaeva, DR Usmanova, EV Putintseva, L Espinar, KS Sarkisyan, ... PLoS genetics 15 (4), e1008079, 2019	48	2019
There and back again: Two views on the protein folding puzzle AV Finkelstein, AJ Badretdin, OV Galzitskaya, DN Ivankov, NS Bogatyreva, ... Physics of life reviews 21, 56-71, 2017	48	2017
A structural perspective of compensatory evolution DN Ivankov, AV Finkelstein, FA Kondrashov Current opinion in structural biology 26, 104-112, 2014	45	2014
More compact protein globules exhibit slower folding rates OV Galzitskaya, DC Reifsnyder, NS Bogatyreva, DN Ivankov, ... Proteins: Structure, Function, and Bioinformatics 70 (2), 329-332, 2008	45	2008
Self-consistency test reveals systematic bias in programs for prediction change of stability upon mutation DR Usmanova, NS Bogatyreva, J Ariño Bernad, AA Eremina, ... Bioinformatics 34 (21), 3653-3658, 2018	44	2018
Theoretical Study of a Landscape of Protein Folding− Unfolding Pathways. Folding Rates at Midtransition DN Ivankov, AV Finkelstein Biochemistry 40 (33), 9957-9961, 2001	42	2001
How many signal peptides are there in bacteria? DN Ivankov, SH Payne, MY Galperin, S Bonissone, PA Pevzner, ... Environmental microbiology 15 (4), 983-990, 2013	37	2013
Unexpected diversity of signal peptides in prokaryotes SH Payne, S Bonissone, S Wu, RN Brown, DN Ivankov, D Frishman, ... MBio 3 (6), e00339-12, 2012	32	2012
Compactness determines protein folding type OV Galzitskaya, NS Bogatyreva, DN Ivankov Journal of Bioinformatics and Computational Biology 6 (04), 667-680, 2008	27	2008
Understanding the folding rates and folding nuclei of globular proteins AV Finkelstein, DN Ivankov, SO Garbuzynskiy, OV Galzitskaya Current Protein and Peptide Science 8 (6), 521-536, 2007	23	2007
QARIP: a web server for quantitative proteomic analysis of regulated intramembrane proteolysis DN Ivankov, NS Bogatyreva, P Hönigschmid, B Dislich, S Hogl, PH Kuhn, ... Nucleic acids research 41 (W1), W459-W464, 2013	22	2013

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