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Dmitry Ivankov
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Contact order revisited: influence of protein size on the folding rate
DN Ivankov, SO Garbuzynskiy, E Alm, KW Plaxco, D Baker, AV Finkelstein
Protein science 12 (9), 2057-2062, 2003
4152003
Local fitness landscape of the green fluorescent protein
KS Sarkisyan, DA Bolotin, MV Meer, DR Usmanova, AS Mishin, ...
Nature 533 (7603), 397-401, 2016
3542016
Prediction of protein folding rates from the amino acid sequence-predicted secondary structure
DN Ivankov, AV Finkelstein
Proceedings of the National Academy of Sciences 101 (24), 8942-8944, 2004
2292004
Chain length is the main determinant of the folding rate for proteins with three‐state folding kinetics
OV Galzitskaya, SO Garbuzynskiy, DN Ivankov, AV Finkelstein
Proteins: Structure, Function, and Bioinformatics 51 (2), 162-166, 2003
1702003
Folding nuclei in proteins
OV Galzitskaya, DN Ivankov, AV Finkelstein
Molecular Biology 35 (4), 605-613, 2001
1012001
Coupling between properties of the protein shape and the rate of protein folding
DN Ivankov, NS Bogatyreva, MY Lobanov, OV Galzitskaya
PloS one 4 (8), e6476, 2009
762009
Golden triangle for folding rates of globular proteins
SO Garbuzynskiy, DN Ivankov, NS Bogatyreva, AV Finkelstein
Proceedings of the National Academy of Sciences 110 (1), 147-150, 2013
732013
Golden triangle for folding rates of globular proteins
SO Garbuzynskiy, DN Ivankov, NS Bogatyreva, AV Finkelstein
Proceedings of the National Academy of Sciences 110 (1), 147-150, 2013
732013
KineticDB: a database of protein folding kinetics
NS Bogatyreva, AA Osypov, DN Ivankov
Nucleic Acids Research 37 (suppl_1), D342-D346, 2009
712009
An experimental assay of the interactions of amino acids from orthologous sequences shaping a complex fitness landscape
VO Pokusaeva, DR Usmanova, EV Putintseva, L Espinar, KS Sarkisyan, ...
PLoS genetics 15 (4), e1008079, 2019
482019
There and back again: Two views on the protein folding puzzle
AV Finkelstein, AJ Badretdin, OV Galzitskaya, DN Ivankov, NS Bogatyreva, ...
Physics of life reviews 21, 56-71, 2017
482017
A structural perspective of compensatory evolution
DN Ivankov, AV Finkelstein, FA Kondrashov
Current opinion in structural biology 26, 104-112, 2014
452014
More compact protein globules exhibit slower folding rates
OV Galzitskaya, DC Reifsnyder, NS Bogatyreva, DN Ivankov, ...
Proteins: Structure, Function, and Bioinformatics 70 (2), 329-332, 2008
452008
Self-consistency test reveals systematic bias in programs for prediction change of stability upon mutation
DR Usmanova, NS Bogatyreva, J Ariño Bernad, AA Eremina, ...
Bioinformatics 34 (21), 3653-3658, 2018
442018
Theoretical Study of a Landscape of Protein Folding− Unfolding Pathways. Folding Rates at Midtransition
DN Ivankov, AV Finkelstein
Biochemistry 40 (33), 9957-9961, 2001
422001
How many signal peptides are there in bacteria?
DN Ivankov, SH Payne, MY Galperin, S Bonissone, PA Pevzner, ...
Environmental microbiology 15 (4), 983-990, 2013
372013
Unexpected diversity of signal peptides in prokaryotes
SH Payne, S Bonissone, S Wu, RN Brown, DN Ivankov, D Frishman, ...
MBio 3 (6), e00339-12, 2012
322012
Compactness determines protein folding type
OV Galzitskaya, NS Bogatyreva, DN Ivankov
Journal of Bioinformatics and Computational Biology 6 (04), 667-680, 2008
272008
Understanding the folding rates and folding nuclei of globular proteins
AV Finkelstein, DN Ivankov, SO Garbuzynskiy, OV Galzitskaya
Current Protein and Peptide Science 8 (6), 521-536, 2007
232007
QARIP: a web server for quantitative proteomic analysis of regulated intramembrane proteolysis
DN Ivankov, NS Bogatyreva, P Hönigschmid, B Dislich, S Hogl, PH Kuhn, ...
Nucleic acids research 41 (W1), W459-W464, 2013
222013
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Articles 1–20