Kentaro K. Shimizu

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Jun SeseHumanome Lab Inc.Verified email at humanome.jp
Takashi TsuchimatsuUniversity of TokyoVerified email at bs.s.u-tokyo.ac.jp
Hiroshi KudohProfessor of Plant Ecology, Center for Ecological Research, Kyoto UniversityVerified email at ecology.kyoto-u.ac.jp
Timothy PaapeBrookhaven National LaboratoryVerified email at bnl.gov
Alex WidmerETH ZurichVerified email at env.ethz.ch
Karol MarholdInst. of Botany, Slovak Academy of Sciences, Bratislava & Dept. of Botany, Charles UniversityVerified email at natur.cuni.cz
Tanaka KentaAssociate Professor, Sugadaira Research Station, Mountain Science Center, University of TsukubaVerified email at sugadaira.tsukuba.ac.jp
Andrew TedderAssociate Professor in Computational Biology, University of BradfordVerified email at bradford.ac.uk
Masao WatanabeProfessor, Graduate School of Life Sciences, Tohoku UniversityVerified email at ige.tohoku.ac.jp
Keita SuwabeMie UniversityVerified email at bio.mie-u.ac.jp
Magnus NordborgGregor Mendel Institute, Austrian Academy of SciencesVerified email at gmi.oeaw.ac.at
Christian RellstabWSL, Birmensdorf, SwitzerlandVerified email at wsl.ch
Beat KellerProfessor for Plant Molecular Biology, University of ZurichVerified email at botinst.uzh.ch
Stefan ZollerETH Zurich, SwitzerlandVerified email at env.ethz.ch
Roman Volodymyr BriskineScience IT Consultant, Universität ZürichVerified email at uzh.ch
wicker thomasuniversity of ZurichVerified email at botinst.uzh.ch
Tomoaki NishiyamaKanazawa UniversityVerified email at staff.kanazawa-u.ac.jp
Hiromi MatsumaeAssistant Professor, Tokai University School of MedicineVerified email at tokai.ac.jp
Roi Ben-DavidDepartment of Vegetables and Field crops Institute of Plant Sciences ARO-Volcani CenterVerified email at volcani.agri.gov.il
Stefan RofflerUniversity of ZurichVerified email at uzh.ch

Kentaro K. Shimizu

Professor at the University of Zurich, and Guest Professor at the Yokohama City University

Verified email at uzh.ch - Homepage

polyploidy self-incompatibility plant mating systems ecological genomics


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Attractive and repulsive interactions between female and male gametophytes in Arabidopsis pollen tube guidance KK Shimizu, K Okada Development 127 (20), 4511-4518, 2000	275	2000
Multiple wheat genomes reveal global variation in modern breeding S Walkowiak, L Gao, C Monat, G Haberer, MT Kassa, J Brinton, ... Nature 588 (7837), 277-283, 2020	251	2020
The wheat powdery mildew genome shows the unique evolution of an obligate biotroph T Wicker, S Oberhaensli, F Parlange, JP Buchmann, M Shatalina, ... Nature Genetics 45 (9), 1092-1096, 2013	221	2013
Estimating genomic diversity and population differentiation–an empirical comparison of microsatellite and SNP variation in Arabidopsis halleri MC Fischer, C Rellstab, M Leuzinger, M Roumet, F Gugerli, KK Shimizu, ... BMC genomics 18 (1), 69, 2017	199	2017
Diversity at the Mla Powdery Mildew Resistance Locus from Cultivated Barley Reveals Sites of Positive Selection S Seeholzer, T Tsuchimatsu, T Jordan, S Bieri, S Pajonk, W Yang, ... Molecular Plant-Microbe Interactions 23 (4), 497-509, 2010	179	2010
Sequencing of the genus Arabidopsis identifies a complex history of nonbifurcating speciation and abundant trans-specific polymorphism PY Novikova, N Hohmann, V Nizhynska, T Tsuchimatsu, J Ali, G Muir, ... Nature genetics 48 (9), 1077-1082, 2016	164	2016
Robust control of the seasonal expression of the Arabidopsis FLC gene in a fluctuating environment S Aikawa, MJ Kobayashi, A Satake, KK Shimizu, H Kudoh Proceedings of the National Academy of Sciences 107 (25), 11632, 2010	157	2010
Evolution of self-compatibility in Arabidopsis by a mutation in the male specificity gene T Tsuchimatsu, K Suwabe, R Shimizu-Inatsugi, S Isokawa, P Pavlidis, ... Nature 464 (7293), 1342-1346, 2010	146	2010
Hybridization of powdery mildew strains gives rise to pathogens on novel agricultural crop species F Menardo, CR Praz, S Wyder, R Ben-David, S Bourras, H Matsumae, ... Nature Genetics 48 (2), 201-205, 2016	145	2016
Using knockout mutants to reveal the growth costs of defensive traits T Züst, B Joseph, KK Shimizu, DJ Kliebenstein, LA Turnbull Proceedings of the Royal Society B: Biological Sciences 278 (1718), 2598-2603, 2011	131	2011
Evolution and control of imprinted FWA genes in the genus Arabidopsis R Fujimoto, Y Kinoshita, A Kawabe, T Kinoshita, K Takashima, ... PLoS Genetics 4 (4), e1000048, 2008	117	2008
Population genomic footprints of selection and associations with climate in natural populations of Arabidopsis halleri from the Alps MC Fischer, C Rellstab, A Tedder, S Zoller, F Gugerli, KK Shimizu, ... Molecular ecology 22 (22), 5594-5607, 2013	113	2013
The allopolyploid Arabidopsis kamchatica originated from multiple individuals of Arabidopsis lyrata and Arabidopsis halleri RIE Shimizu‐Inatsugi, J Lihova, H Iwanaga, H Kudoh, K Marhold, ... Molecular Ecology 18 (19), 4024-4048, 2009	110	2009
Evolution of selfing: recurrent patterns in molecular adaptation KK Shimizu, T Tsuchimatsu Annual Review of Ecology, Evolution, and Systematics 46, 593-622, 2015	105	2015
Gene duplication and genetic exchange drive the evolution of S-RNase-based self-incompatibility in Petunia K Kubo, T Paape, M Hatakeyama, T Entani, A Takara, K Kajihara, ... Nature Plants 1 (1), 14005, 2015	99	2015
Molecular basis of flowering under natural long-day conditions in Arabidopsis YH Song, A Kubota, MS Kwon, MF Covington, N Lee, ER Taagen, ... Nature Plants 4 (10), 824-835, 2018	97	2018
Allopolyploid origin of Cardamine asarifolia (Brassicaceae): incongruence between plastid and nuclear ribosomal DNA sequences solved by a single-copy nuclear gene J Lihová, KK Shimizu, K Marhold Molecular phylogenetics and evolution 39 (3), 759-786, 2006	95	2006
Genome-wide quantification of homeolog expression ratio revealed nonstochastic gene regulation in synthetic allopolyploid Arabidopsis S Akama, R Shimizu-Inatsugi, KK Shimizu, J Sese Nucleic acids research 42 (6), e46-e46, 2014	94	2014
Independent origins of self‐compatibility in Arabidopsis thaliana KK Shimizu, RIE SHIMIZU‐INATSUGI, T Tsuchimatsu, MD Purugganan Molecular ecology 17 (2), 704-714, 2008	90	2008
Reference-guided de novo assembly approach improves genome reconstruction for related species HEL Lischer, KK Shimizu BMC bioinformatics 18 (1), 474, 2017	89	2017

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