| Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa R Viana, S Moyo, DG Amoako, H Tegally, C Scheepers, CL Althaus, ... Nature 603 (7902), 679-686, 2022 | 1440 | 2022 |
| Emergence of SARS-CoV-2 omicron lineages BA. 4 and BA. 5 in South Africa H Tegally, M Moir, J Everatt, M Giovanetti, C Scheepers, E Wilkinson, ... Nature medicine 28 (9), 1785-1790, 2022 | 524 | 2022 |
| Multiplex qPCR discriminates variants of concern to enhance global surveillance of SARS-CoV-2 CBF Vogels, MI Breban, IM Ott, T Alpert, ME Petrone, AE Watkins, ... PLoS biology 19 (5), e3001236, 2021 | 209 | 2021 |
| A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa E Wilkinson, M Giovanetti, H Tegally, JE San, R Lessells, D Cuadros, ... Science 374 (6566), 423-431, 2021 | 191 | 2021 |
| Continued emergence and evolution of Omicron in South Africa: New BA. 4 and BA. 5 lineages H Tegally, M Moir, J Everatt, M Giovanetti, C Scheepers, E Wilkinson, ... MedRxiv, 2022.05. 01.22274406, 2022 | 106 | 2022 |
| The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance H Tegally, JE San, M Cotten, M Moir, B Tegomoh, G Mboowa, DP Martin, ... Science 378 (6615), eabq5358, 2022 | 94 | 2022 |
| Kosakovsky Pond SL R Viana, S Moyo, DG Amoako, H Tegally, C Scheepers, CL Althaus, ... Kraemer MUG, Kuate-Lere L, Laguda-Akingba O, Lesetedi-Mafoko O, Lessells RJ …, 2022 | 77 | 2022 |
| Rapid replacement of the Beta variant by the Delta variant in South Africa H Tegally, E Wilkinson, CL Althaus, M Giovanetti, JE San, J Giandhari, ... MedRxiv, 2021.09. 23.21264018, 2021 | 53 | 2021 |
| PCR assay to enhance global surveillance for SARS-CoV-2 variants of concern CBF Vogels, MI Breban, T Alpert, ME Petrone, AE Watkins, IM Ott, ... MedRxiv, 2021 | 41 | 2021 |
| Comparison of SARS-CoV-2 sequencing using the ONT GridION and the Illumina MiSeq D Tshiabuila, J Giandhari, S Pillay, U Ramphal, Y Ramphal, A Maharaj, ... BMC genomics 23 (1), 319, 2022 | 34 | 2022 |
| Implementation of an efficient SARS-CoV-2 specimen pooling strategy for high throughput diagnostic testing L Singh, UJ Anyaneji, W Ndifon, N Turok, SA Mattison, R Lessells, ... Scientific reports 11 (1), 17793, 2021 | 7 | 2021 |
| Targeted Sanger sequencing to recover key mutations in SARS-CoV-2 variant genome assemblies produced by next-generation sequencing L Singh, JE San, H Tegally, PM Brzoska, UJ Anyaneji, E Wilkinson, ... Microbial Genomics 8 (3), 000774, 2022 | 5 | 2022 |
| Genomic epidemiology of SARS-CoV-2 during the first four waves in Mozambique N Ismael, S van Wyk, H Tegally, J Giandhari, JE San, M Moir, S Pillay, ... PLOS global public health 3 (3), e0001593, 2023 | 2 | 2023 |
| Evaluation of miniaturized Illumina DNA preparation protocols for SARS-CoV-2 whole genome sequencing S Pillay, JE San, D Tshiabuila, Y Naidoo, Y Pillay, A Maharaj, UJ Anyaneji, ... Plos one 18 (4), e0283219, 2023 | 1 | 2023 |
| An Oxford Nanopore Technology-Based Hepatitis B Virus Sequencing Protocol Suitable For Genomic Surveillance Within Clinical Diagnostic Settings D Tshiabuila, W Choga, SE James, T Maponga, W Preiser, G van Zyl, ... medRxiv, 2024.01. 19.24301519, 2024 | | 2024 |
| Evaluation of miniaturized Illumina DNA preparation protocols for SARS-CoV-2 whole genome sequencing protocol S Pillay, JE San, D Tshiabuila, Y Naidoo, Y Pillay, A Maharaj, UJ Anyaneji, ... | | 2023 |
| Implementation of an efficient sample pooling strategy for high throughput diagnostic testing of Severe Acute Respiratory Syndrome Corona Virus-2. UJ Anyaneji | | 2022 |
| The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance.(preprint) H Tegally, JE San, M Cotten, B Tegomoh, G Mboowa, DP Martin, C Baxter, ... | | 2022 |
| Comparison of SARS-CoV-2 sequencing using the ONT GridION and the Illumina MiSeq (preprint) D Tshiabuila, J Giandhari, S Pillay, U Ramphal, Y Ramphal, A Maharaj, ... | | 2022 |
| Targeted Sequencing by Sanger to Recover Key Mutations in Illumina SARS-CoV-2 Whole-genome Sequences L Singh, PM Brzoska, UJ Anyaneji, JE San, T De Oliveira | | 2021 |
San Emmanuel JamesBioinformatician II, Duke Human Vaccine InstituteVerified email at ukzn.ac.za
