PEAR: a fast and accurate Illumina Paired-End reAd mergeR J Zhang, K Kobert, T Flouri, A Stamatakis Bioinformatics 30 (5), 614-620, 2014 | 3261 | 2014 |

Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo P Kapli, S Lutteropp, J Zhang, K Kobert, P Pavlidis, A Stamatakis, T Flouri Bioinformatics 33 (11), 1630-1638, 2017 | 544 | 2017 |

ExaBayes: massively parallel Bayesian tree inference for the whole-genome era AJ Aberer, K Kobert, A Stamatakis Molecular biology and evolution 31 (10), 2553-2556, 2014 | 381 | 2014 |

Computing the internode certainty and related measures from partial gene trees K Kobert, L Salichos, A Rokas, A Stamatakis Molecular biology and evolution 33 (6), 1606-1617, 2016 | 69 | 2016 |

Longest common substrings with k mismatches T Flouri, E Giaquinta, K Kobert, E Ukkonen Information Processing Letters 115 (6-8), 643-647, 2015 | 41 | 2015 |

Efficient detection of repeating sites to accelerate phylogenetic likelihood calculations K Kobert, A Stamatakis, T Flouri Systematic biology 66 (2), 205-217, 2017 | 25 | 2017 |

The divisible load balance problem and its application to phylogenetic inference K Kobert, T Flouri, A Aberer, A Stamatakis International Workshop on Algorithms in Bioinformatics, 204-216, 2014 | 25 | 2014 |

An optimal algorithm for computing all subtree repeats in trees T Flouri, K Kobert, SP Pissis, A Stamatakis International Workshop on Combinatorial Algorithms, 269-282, 2013 | 11 | 2013 |

The divisible load balance problem with shared cost and its application to phylogenetic inference C Scholl, K Kobert, T Flouri, A Stamatakis 2016 IEEE International Parallel and Distributed Processing Symposium …, 2016 | 7 | 2016 |

Are all global alignment algorithms and implementations correct? T Flouri, K Kobert, T Rognes, A Stamatakis bioRxiv, 031500, 2015 | 7 | 2015 |

An optimal algorithm for computing all subtree repeats in trees T Flouri, K Kobert, SP Pissis, A Stamatakis Philosophical Transactions of the Royal Society A: Mathematical, Physical …, 2014 | 5 | 2014 |

Heuristic algorithms for the protein model assignment problem J Hauser, K Kobert, F Izquierdo-Carrasco, K Meusemann, B Misof, ... International Symposium on Bioinformatics Research and Applications, 137-148, 2013 | 4 | 2013 |

Is the Protein Model Assignment problem under linked branch lengths NP-hard? K Kobert, J Hauser, A Stamatakis Theoretical Computer Science 524, 48-58, 2014 | 2 | 2014 |

Adaptation to host cell environment during experimental evolution of Zika virus V Grass, E Hardy, K Kobert, SR Talemi, E Décembre, C Guy, PV Markov, ... BioRxiv, 2020.12. 28.424577, 2021 | 1 | 2021 |

An Efficient Approach to Merging Paired-End Reads and Incorporation of Uncertainties T Flouri, J Zhang, L Czech, K Kobert, A Stamatakis Algorithms for Next-Generation Sequencing Data, 299-325, 2017 | 1 | 2017 |

A simple method for computing all subtree repeats in unordered trees in linear time T Flouri, K Kobert, SP Pissis, A Stamatakis Festschrift for Borivoj Melichar, 145-152, 2012 | 1 | 2012 |

Awesome Open Source Awesome Open Source Libpll T Flouri, D Darriba, K Kobert, MT Holder, A Kozlov, A Stamatakis, ... | | |

Mathematical Problems in Molecular Evolution and Next Generation Sequencing K Kobert | | |