| Integrative genomic mining for enzyme function to enable engineering of a non-natural biosynthetic pathway WS Mak, S Tran, R Marcheschi, S Bertolani, J Thompson, D Baker, ... Nature communications 6 (1), 10005, 2015 | 93 | 2015 |
| Comparative analyses of ubiquitin-like ATG8 and cysteine protease ATG4 autophagy genes in the plant lineage and cross-kingdom processing of ATG8 by ATG4 E Seo, J Woo, E Park, SJ Bertolani, JB Siegel, D Choi, SP Dinesh-Kumar Autophagy 12 (11), 2054-2068, 2016 | 58 | 2016 |
| Mechanistically informed predictions of binding modes for carbocation intermediates of a sesquiterpene synthase reaction TE O'Brien, SJ Bertolani, DJ Tantillo, JB Siegel Chemical science 7 (7), 4009-4015, 2016 | 46 | 2016 |
| Predicting productive binding modes for substrates and carbocation intermediates in terpene synthases—bornyl diphosphate synthase as a representative case TE O’Brien, SJ Bertolani, Y Zhang, JB Siegel, DJ Tantillo ACS catalysis 8 (4), 3322-3330, 2018 | 39 | 2018 |
| Biocatalytic conversion of ethylene to ethylene oxide using an engineered toluene monooxygenase DA Carlin, SJ Bertolani, JB Siegel Chemical communications 51 (12), 2283-2285, 2015 | 14 | 2015 |
| PyRosetta Jupyter notebooks teach biomolecular structure prediction and design KH Le, J Adolf-Bryfogle, JC Klima, S Lyskov, JW Labonte, S Bertolani, ... The Biophysicist 2 (1), 108-122, 2021 | 13 | 2021 |
| Discovery, design, and structural characterization of alkane-producing enzymes across the ferritin-like superfamily WS Mak, XK Wang, R Arenas, Y Cui, S Bertolani, WQ Deng, ... Biochemistry 59 (40), 3834-3843, 2020 | 13 | 2020 |
| The Zinc Linchpin Motif in the DNA Repair Glycosylase MUTYH: Identifying the Zn2+ Ligands and Roles in Damage Recognition and Repair NN Nuñez, C Khuu, CS Babu, SJ Bertolani, AN Rajavel, JE Spear, ... Journal of the American Chemical Society 140 (41), 13260-13271, 2018 | 10 | 2018 |
| Integrative genomic mining for enzyme function to enable engineering of a non-natural biosynthetic pathway. Nat Commun 6: 10005 WS Mak, S Tran, R Marcheschi, S Bertolani, J Thompson, D Baker, ... | 8 | 2015 |
| A new benchmark illustrates that integration of geometric constraints inferred from enzyme reaction chemistry can increase enzyme active site modeling accuracy SJ Bertolani, JB Siegel Plos one 14 (4), e0214126, 2019 | 6 | 2019 |
| A Benchmark for Homomeric Enzyme Active Site Structure Prediction Highlights the Importance of Accurate Modeling of Protein Symmetry SC Contreras, SJ Bertolani, JB Siegel ACS omega 4 (27), 22356-22362, 2019 | 1 | 2019 |
| Computational Methods for Modeling Enzymes SJ Bertolani University of California, Davis, 2018 | | 2018 |
| Discovery of enzymes from the alpha-keto acid decarboxylase family J Siegel, S Bertolani, WS Mak, J Liao, S Tran, R Marcheschi, J Thompson, ... | | 2017 |
| Computational Introduction of Catalytic Activity into Proteins SJ Bertolani, DA Carlin, JB Siegel Computational Design of Ligand Binding Proteins, 213-231, 2016 | | 2016 |
