| SilencerDB: a comprehensive database of silencers W Zeng, S Chen, X Cui, X Chen, Z Gao, R Jiang Nucleic acids research 49 (D1), D221-D228, 2021 | 37 | 2021 |
| OpenAnnotate: a web server to annotate the chromatin accessibility of genomic regions S Chen, Q Liu, X Cui, Z Feng, C Li, X Wang, X Zhang, Y Wang, R Jiang Nucleic Acids Research 49 (W1), W483-W490, 2021 | 18 | 2021 |
| scEpiTools: a database to comprehensively interrogate analytic tools for single-cell epigenomic data Z Gao, X Chen, Z Li, X Cui, S Chen, R Jiang bioRxiv, 2023.04. 27.538652, 2023 | 11 | 2023 |
| scCASE: accurate and interpretable enhancement for single-cell chromatin accessibility sequencing data S Tang, X Cui, R Wang, S Li, S Li, X Huang, S Chen Nature Communications 15 (1), 1629, 2024 | 2 | 2024 |
| Discrete latent embedding of single-cell chromatin accessibility sequencing data for uncovering cell heterogeneity X Cui, X Chen, Z Li, Z Gao, S Chen, R Jiang Nature Computational Science, 1-14, 2024 | | 2024 |
| Publisher Correction: scCASE: accurate and interpretable enhancement for single-cell chromatin accessibility sequencing data S Tang, X Cui, R Wang, S Li, S Li, X Huang, S Chen nature communications 15, 2024 | | 2024 |
| collectNET: a web server for integrated inference of cell-cell communication network Y Pan, Z Gao, X Cui, Z Li, R Jiang bioRxiv, 2024.03. 18.585493, 2024 | | 2024 |
