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Ruth B. De-Paula
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Global characterization of fungal mitogenomes: new insights on genomic diversity and dynamism of coding genes and accessory elements
PLC Fonseca, RB De-Paula, DS Araújo, LMR Tomé, T Mendes-Pereira, ...
Frontiers in Microbiology 12, 787283, 2021
332021
Translesion polymerase eta both facilitates DNA replication and promotes increased human genetic variation at common fragile sites
S Twayana, A Bacolla, A Barreto-Galvez, RB De-Paula, WC Drosopoulos, ...
Proceedings of the National Academy of Sciences 118 (48), e2106477118, 2021
322021
Blood-stage Plasmodium vivax antibody dynamics in a low transmission setting: A nine year follow-up study in the Amazon region
CV Pires, JRS Alves, BAS Lima, RB Paula, HL Costa, LM Torres, ...
PLoS One 13 (11), e0207244, 2018
292018
Heritable pattern of oxidized DNA base repair coincides with pre-targeting of repair complexes to open chromatin
A Bacolla, S Sengupta, Z Ye, C Yang, J Mitra, RB De-Paula, ML Hegde, ...
Nucleic acids research 49 (1), 221-243, 2021
272021
Exploring the relationship among divergence time and coding and non-coding elements in the shaping of fungal mitochondrial genomes
PLC Fonseca, F Badotti, RB De-Paula, DS Araújo, DE Bortolini, ...
Frontiers in Microbiology 11, 765, 2020
192020
Comparative mitogenomics of Agaricomycetes: Diversity, abundance, impact and coding potential of putative open-reading frames
DS Araújo, RB De-Paula, LMR Tomé, G Quintanilha-Peixoto, ...
Mitochondrion 58, 1-13, 2021
182021
Functional screening of lysosomal storage disorder genes identifies modifiers of alpha-synuclein neurotoxicity
M Yu, H Ye, RB De-Paula, CG Mangleburg, T Wu, TV Lee, Y Li, D Duong, ...
PLoS genetics 19 (5), e1010760, 2023
152023
Phylogenomics and gene selection in Aspergillus welwitschiae: Possible implications in the pathogenicity in Agave sisalana
G Quintanilha-Peixoto, MP Marone, FT Raya, J José, A Oliveira, ...
Genomics 114 (6), 110517, 2022
82022
Alzheimer’s disease risk gene CD2AP is a dose-sensitive determinant of synaptic structure and plasticity
M Pavešković, RB De-Paula, SA Ojelade, EK Tantry, MY Kochukov, S Bao, ...
Human Molecular Genetics 33 (20), 1815-1832, 2024
72024
Enriched G4 forming repeats in the human genome are associated with robust well-coordinated transcription and reduced cancer transcriptome variation
RB De-Paula, A Bacolla, A Syed, JA Tainer
Journal of Biological Chemistry 300 (11), 107822, 2024
22024
Haploinsufficiency of ITSN1 is associated with Parkinson’s disease
TP Spargo, CF Sands, IR Juan, J Mitchell, V Ravanmehr, JC Butts, ...
medRxiv, 2024.07. 25.24310988, 2024
12024
Haploinsufficiency of ITSN1 is associated with a substantial increased risk of Parkinson’s disease
TP Spargo, CF Sands, IR Juan, J Mitchell, V Ravanmehr, JC Butts, ...
Cell Reports 44 (3), 2025
2025
Using supercomputing resources in genomic research
A Bacolla, CL Tsai, Z Ye, RB De-Paula, D Moiani, Z Ahmed, JA Tainer
2021
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Articles 1–13