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Guillaume Marçais
Guillaume Marçais
System Scientist
Verified email at cs.cmu.edu - Homepage
Title
Cited by
Cited by
Year
A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
G Marçais, C Kingsford
Bioinformatics 27 (6), 764-770, 2011
32682011
MUMmer4: A fast and versatile genome alignment system
G Marçais, AL Delcher, AM Phillippy, R Coston, SL Salzberg, A Zimin
PLoS computational biology 14 (1), e1005944, 2018
13572018
A whole-genome assembly of the domestic cow, Bos taurus
AV Zimin, AL Delcher, L Florea, DR Kelley, MC Schatz, D Puiu, ...
Genome biology 10 (4), R42, 2009
13552009
The MaSuRCA genome assembler
AV Zimin, G Marçais, D Puiu, M Roberts, SL Salzberg, JA Yorke
Bioinformatics 29 (21), 2669-2677, 2013
12942013
GAGE: A critical evaluation of genome assemblies and assembly algorithms
SL Salzberg, AM Phillippy, A Zimin, D Puiu, T Magoc, S Koren, ...
Genome research 22 (3), 557-567, 2012
8852012
GAGE: A critical evaluation of genome assemblies and assembly algorithms
SL Salzberg, AM Phillippy, A Zimin, D Puiu, T Magoc, S Koren, ...
Genome research 22 (3), 557-567, 2012
8852012
Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies
DB Neale, JL Wegrzyn, KA Stevens, AV Zimin, D Puiu, MW Crepeau, ...
Genome Biology 15 (3), R59, 2014
5392014
Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis
RA Dalloul, JA Long, AV Zimin, L Aslam, K Beal, LA Blomberg, P Bouffard, ...
PLoS biology 8 (9), e1000475, 2010
4652010
Sequencing and assembly of the 22-Gb loblolly pine genome
A Zimin, KA Stevens, MW Crepeau, A Holtz-Morris, M Koriabine, ...
Genetics 196 (3), 875-890, 2014
3792014
Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm
AV Zimin, D Puiu, MC Luo, T Zhu, S Koren, G Marçais, JA Yorke, J Dvořák, ...
Genome Research 27 (5), 787-792, 2017
3782017
Sequence of the Sugar Pine Megagenome
KA Stevens, JL Wegrzyn, A Zimin, D Puiu, M Crepeau, C Cardeno, R Paul, ...
Genetics 204 (4), 1613-1626, 2016
1892016
A new rhesus macaque assembly and annotation for next-generation sequencing analyses
AV Zimin, AS Cornish, MD Maudhoo, RM Gibbs, X Zhang, S Pandey, ...
Biology direct 9 (1), 20, 2014
1822014
QuorUM: an error corrector for Illumina reads
G Marçais, JA Yorke, A Zimin
PloS one 10 (6), e0130821, 2015
962015
Improving the performance of minimizers and winnowing schemes
G Marçais, D Pellow, D Bork, Y Orenstein, R Shamir, C Kingsford
Bioinformatics 33 (14), i110-i117, 2017
652017
Locality-sensitive hashing for the edit distance
G Marçais, D DeBlasio, P Pandey, C Kingsford
Bioinformatics 35 (14), i127-i135, 2019
602019
Jellyfish: A fast k-mer counter
G Marcais, C Kingsford
542012
Designing small universal k-mer hitting sets for improved analysis of high-throughput sequencing.
Y Orenstein, D Pellow, G Marçais, R Shamir, C Kingsford
PLoS computational biology 13 (10), e1005777, 2017
482017
Sketching and sublinear data structures in genomics
G Marçais, B Solomon, R Patro, C Kingsford
Annual Review of Biomedical Data Science 2, 93-118, 2019
422019
Asymptotically optimal minimizers schemes
G Marçais, D DeBlasio, C Kingsford
Bioinformatics 34 (13), i13-i22, 2018
412018
Mis-assembled “segmental duplications” in two versions of the Bos taurus genome
AV Zimin, DR Kelley, M Roberts, G Marçais, SL Salzberg, JA Yorke
PLoS One 7 (8), e42680, 2012
392012
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Articles 1–20