| Bridge: A graph-based algorithm to analyze dynamic H-bond networks in membrane proteins M Siemers, M Lazaratos, K Karathanou, F Guerra, LS Brown, AN Bondar Journal of chemical theory and computation 15 (12), 6781-6798, 2019 | 41 | 2019 |
| Mechanism of inward proton transport in an antarctic microbial rhodopsin A Harris, M Lazaratos, M Siemers, E Watt, A Hoang, S Tomida, L Schubert, ... The Journal of Physical Chemistry B 124 (24), 4851-4872, 2020 | 34 | 2020 |
| A graph-based approach identifies dynamic H-bond communication networks in spike protein S of SARS-CoV-2 K Karathanou, M Lazaratos, É Bertalan, M Siemers, K Buzar, ... Journal of structural biology 212 (2), 107617, 2020 | 28 | 2020 |
| Frontiers in multiscale modeling of photoreceptor proteins MA Mroginski, S Adam, GS Amoyal, A Barnoy, AN Bondar, VA Borin, ... Photochemistry and Photobiology 97 (2), 243-269, 2021 | 27 | 2021 |
| Structural basis of adenylyl cyclase 9 activation C Qi, P Lavriha, V Mehta, B Khanppnavar, I Mohammed, Y Li, ... Nature Communications 13 (1), 1-11, 2022 | 18 | 2022 |
| Coating of magnetic nanoparticles affects their interactions with model cell membranes M Lazaratos, K Karathanou, E Mainas, A Chatzigoulas, N Pippa, ... Biochimica et Biophysica Acta (BBA)-General Subjects 1864 (11), 129671, 2020 | 17 | 2020 |
| Graphs of dynamic H-bond networks: from model proteins to protein complexes in cell signaling M Lazaratos, K Karathanou, AN Bondar Current Opinion in Structural Biology 64, 79-87, 2020 | 15 | 2020 |
| Conserved hydrogen-bond motifs of membrane transporters and receptors M Lazaratos, M Siemers, LS Brown, AN Bondar Biochimica et Biophysica Acta (BBA)-Biomembranes 1864 (6), 183896, 2022 | 9 | 2022 |
| Conformational coupling and proton binding with dynamic hydrogen-bond networks K Karathanou, M Lazaratos, E Bertalan, M Siemers, AN Bondar Biophysical Journal 121 (3), 170a, 2022 | | 2022 |
| Proton Binding at Protein and Membrane Interfaces K Karathanou, L Kemmler, M Lazaratos, M Siemers, AN Bondar Biophysical Journal 118 (3), 179a, 2020 | | 2020 |
| Role of Dynamic Hydrogen-Bond Networks in Protein Allostery K Karathanou, M Lazaratos, M Siemers, AN Bondar Biophysical Journal 116 (3), 498a, 2019 | | 2019 |
