Sridhar Hannenhalli
Sridhar Hannenhalli
Senior Investigator, Cancer Data Science Lab, National Cancer Institute. NIH
Verified email at nih.gov - Homepage
Title
Cited by
Cited by
Year
The sequence of the human genome
JC Venter, MD Adams, EW Myers, PW Li, RJ Mural, GG Sutton, HO Smith, ...
science 291 (5507), 1304-1351, 2001
182522001
Transforming cabbage into turnip: polynomial algorithm for sorting signed permutations by reversals
S Hannenhalli, PA Pevzner
Journal of the ACM (JACM) 46 (1), 1-27, 1999
11431999
The evolution of Fox genes and their role in development and disease
S Hannenhalli, KH Kaestner
Nature Reviews Genetics 10 (4), 233-240, 2009
5992009
Genome-wide analysis of retroviral DNA integration
F Bushman, M Lewinski, A Ciuffi, S Barr, J Leipzig, S Hannenhalli, ...
Nature reviews microbiology 3 (11), 848-858, 2005
4942005
Transforming men into mice (polynomial algorithm for genomic distance problem)
S Hannenhalli, PA Pevzner
Proceedings of IEEE 36th annual foundations of computer science, 581-592, 1995
4641995
Retroviral DNA integration: viral and cellular determinants of target-site selection
MK Lewinski, M Yamashita, M Emerman, A Ciuffi, H Marshall, G Crawford, ...
PLoS pathogens 2 (6), e60, 2006
4372006
Analysis and prediction of functional sub-types from protein sequence alignments
SS Hannenhalli, RB Russell
Journal of molecular biology 303 (1), 61-76, 2000
3192000
Genome-wide analysis of chromosomal features repressing human immunodeficiency virus transcription
MK Lewinski, D Bisgrove, P Shinn, H Chen, C Hoffmann, S Hannenhalli, ...
Journal of virology 79 (11), 6610-6619, 2005
3082005
Whole-genome shotgun assembly and comparison of human genome assemblies
S Istrail, GG Sutton, L Florea, AL Halpern, CM Mobarry, R Lippert, ...
Proceedings of the National Academy of Sciences 101 (7), 1916-1921, 2004
2502004
1.375-approximation algorithm for sorting by reversals
P Berman, S Hannenhalli, M Karpinski
European Symposium on Algorithms, 200-210, 2002
2402002
Selection of target sites for mobile DNA integration in the human genome
C Berry, S Hannenhalli, J Leipzig, FD Bushman
PLoS computational biology 2 (11), e157, 2006
2342006
Polynomial-time algorithm for computing translocation distance between genomes
S Hannenhalli
Discrete applied mathematics 71 (1-3), 137-151, 1996
2321996
Fast sorting by reversal
P Berman, S Hannenhalli
Annual Symposium on Combinatorial Pattern Matching, 168-185, 1996
2011996
Transcriptional genomics associates FOX transcription factors with human heart failure
S Hannenhalli, ME Putt, JM Gilmore, J Wang, MS Parmacek, JA Epstein, ...
Circulation 114 (12), 1269-1276, 2006
1792006
Genome sequence comparison and scenarios for gene rearrangements: A test case
S Hannenhalli, C Chappey, EV Koonin, PA Pevzner
Genomics 30 (2), 299-311, 1995
1761995
Promoter prediction in the human genome
S Hannenhalli, S Levy
Bioinformatics 17 (suppl_1), S90-S96, 2001
1572001
Enrichment of regulatory signals in conserved non-coding genomic sequence
S Levy, S Hannenhalli, C Workman
Bioinformatics 17 (10), 871-877, 2001
1562001
RNA-Seq identifies novel myocardial gene expression signatures of heart failure
Y Liu, M Morley, J Brandimarto, S Hannenhalli, Y Hu, EA Ashley, ...
Genomics 105 (2), 83-89, 2015
1482015
Eukaryotic transcription factor binding sites—modeling and integrative search methods
S Hannenhalli
Bioinformatics 24 (11), 1325-1331, 2008
1452008
Local rules for protein folding on a triangular lattice and generalized hydrophobicity in the HP model
R Agarwala, S Batzoglou, V Dančik, SE Decatur, S Hannenhalli, M Farach, ...
Journal of Computational Biology 4 (3), 275-296, 1997
1411997
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