Sridhar Hannenhalli
Sridhar Hannenhalli
Senior Investigator, Cancer Data Science Lab, National Cancer Institute. NIH
Verified email at - Homepage
Cited by
Cited by
The sequence of the human genome
JC Venter, MD Adams, EW Myers, PW Li, RJ Mural, GG Sutton, HO Smith, ...
science 291 (5507), 1304-1351, 2001
Transforming cabbage into turnip: polynomial algorithm for sorting signed permutations by reversals
S Hannenhalli, PA Pevzner
Journal of the ACM (JACM) 46 (1), 1-27, 1999
The evolution of Fox genes and their role in development and disease
S Hannenhalli, KH Kaestner
Nature Reviews Genetics 10 (4), 233-240, 2009
Genome-wide analysis of retroviral DNA integration
F Bushman, M Lewinski, A Ciuffi, S Barr, J Leipzig, S Hannenhalli, ...
Nature reviews microbiology 3 (11), 848-858, 2005
Transforming men into mice (polynomial algorithm for genomic distance problem)
S Hannenhalli, PA Pevzner
Proceedings of IEEE 36th annual foundations of computer science, 581-592, 1995
Retroviral DNA integration: viral and cellular determinants of target-site selection
MK Lewinski, M Yamashita, M Emerman, A Ciuffi, H Marshall, G Crawford, ...
PLoS pathogens 2 (6), e60, 2006
Analysis and prediction of functional sub-types from protein sequence alignments
SS Hannenhalli, RB Russell
Journal of molecular biology 303 (1), 61-76, 2000
Genome-wide analysis of chromosomal features repressing human immunodeficiency virus transcription
MK Lewinski, D Bisgrove, P Shinn, H Chen, C Hoffmann, S Hannenhalli, ...
Journal of virology 79 (11), 6610-6619, 2005
Whole-genome shotgun assembly and comparison of human genome assemblies
S Istrail, GG Sutton, L Florea, AL Halpern, CM Mobarry, R Lippert, ...
Proceedings of the National Academy of Sciences 101 (7), 1916-1921, 2004
1.375-approximation algorithm for sorting by reversals
P Berman, S Hannenhalli, M Karpinski
European Symposium on Algorithms, 200-210, 2002
Selection of target sites for mobile DNA integration in the human genome
C Berry, S Hannenhalli, J Leipzig, FD Bushman
PLoS computational biology 2 (11), e157, 2006
Polynomial-time algorithm for computing translocation distance between genomes
S Hannenhalli
Discrete applied mathematics 71 (1-3), 137-151, 1996
Fast sorting by reversal
P Berman, S Hannenhalli
Annual Symposium on Combinatorial Pattern Matching, 168-185, 1996
Transcriptional genomics associates FOX transcription factors with human heart failure
S Hannenhalli, ME Putt, JM Gilmore, J Wang, MS Parmacek, JA Epstein, ...
Circulation 114 (12), 1269-1276, 2006
Genome sequence comparison and scenarios for gene rearrangements: A test case
S Hannenhalli, C Chappey, EV Koonin, PA Pevzner
Genomics 30 (2), 299-311, 1995
Promoter prediction in the human genome
S Hannenhalli, S Levy
Bioinformatics 17 (suppl_1), S90-S96, 2001
Enrichment of regulatory signals in conserved non-coding genomic sequence
S Levy, S Hannenhalli, C Workman
Bioinformatics 17 (10), 871-877, 2001
RNA-Seq identifies novel myocardial gene expression signatures of heart failure
Y Liu, M Morley, J Brandimarto, S Hannenhalli, Y Hu, EA Ashley, ...
Genomics 105 (2), 83-89, 2015
Eukaryotic transcription factor binding sites—modeling and integrative search methods
S Hannenhalli
Bioinformatics 24 (11), 1325-1331, 2008
Local rules for protein folding on a triangular lattice and generalized hydrophobicity in the HP model
R Agarwala, S Batzoglou, V Dančik, SE Decatur, S Hannenhalli, M Farach, ...
Journal of Computational Biology 4 (3), 275-296, 1997
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