| Bioimpedance spectroscopy: basics and applications DD Stupin, EA Kuzina, AA Abelit, AK Emelyanov, DM Nikolaev, ... ACS Biomaterials Science & Engineering 7 (6), 1962-1986, 2021 | 72 | 2021 |
| A comparative study of modern homology modeling algorithms for rhodopsin structure prediction DM Nikolaev, AA Shtyrov, MS Panov, A Jamal, OB Chakchir, ... ACS omega 3 (7), 7555-7566, 2018 | 55 | 2018 |
| Quantum mechanical and molecular mechanics modeling of membrane-embedded rhodopsins MN Ryazantsev, DM Nikolaev, AV Struts, MF Brown The Journal of Membrane Biology 252 (4), 425-449, 2019 | 17 | 2019 |
| An assessment of water placement algorithms in quantum mechanics/molecular mechanics modeling: The case of rhodopsins’ first spectral absorption band maxima DM Nikolaev, AA Shtyrov, AS Mereshchenko, MS Panov, ... Physical Chemistry Chemical Physics 22 (32), 18114-18123, 2020 | 14 | 2020 |
| Simple models to study spectral properties of microbial and animal rhodopsins: Evaluation of the electrostatic effect of charged and polar residues on the first absorption band … AA Shtyrov, DM Nikolaev, VN Mironov, AV Vasin, MS Panov, ... International Journal of Molecular Sciences 22 (6), 3029, 2021 | 13 | 2021 |
| Photopharmacological compounds based on azobenzenes and azoheteroarenes: Principles of molecular design, molecular modelling, and synthesis MN Ryazantsev, DM Strashkov, DM Nikolaev, AA Shtyrov, MS Panov Russian Chemical Reviews 90 (7), 868, 2021 | 12 | 2021 |
| Perspective tools for optogenetics and photopharmacology: From design to implementation DM Nikolaev, MS Panov, AA Shtyrov, VM Boitsov, SY Vyazmin, ... Progress in Photon Science: Recent Advances, 139-172, 2019 | 11 | 2019 |
| A voltage-dependent fluorescent indicator for optogenetic applications, archaerhodopsin-3: Structure and optical properties from in silico modeling DM Nikolaev, A Emelyanov, VM Boitsov, MS Panov, MN Ryazantsev F1000Research 6, 2017 | 11 | 2017 |
| Fluorescence imaging of cell membrane potential: from relative changes to absolute values DM Nikolaev, VN Mironov, AA Shtyrov, ID Kvashnin, AS Mereshchenko, ... International Journal of Molecular Sciences 24 (3), 2435, 2023 | 7 | 2023 |
| Free Energy Computation for an Isomerizing Chromophore in a Molecular Cavity via the Average Solvent Electrostatic Configuration Model: Applications in Rhodopsin and Rhodopsin … DM Nikolaev, M Manathunga, Y Orozco-Gonzalez, AA Shtyrov, ... Journal of Chemical Theory and Computation 17 (9), 5885-5895, 2021 | 6 | 2021 |
| Azobenzene/Tetraethyl Ammonium Photochromic Potassium Channel Blockers: Scope and Limitations for Design of Para-Substituted Derivatives with Specific Absorption Band Maxima … DM Strashkov, VN Mironov, DM Nikolaev, MS Panov, SA Linnik, ... International Journal of Molecular Sciences 22 (23), 13171, 2021 | 4 | 2021 |
| Molecular mechanisms of adaptation to the habitat depth in visual pigments of A. subulata and L. forbesi squids: on the role of the S270F substitution DM Nikolaev, DE Osipov, DM Strashkov, SY Vyazmin, VE Akulov, ... Journal of Integrated OMICS 9 (1), 44-50, 2019 | 4 | 2019 |
| Au–ru composite for enzyme-free epinephrine sensing MS Panov, AP Zakharov, EM Khairullina, II Tumkin, AS Mereshchenko, ... Chemosensors 10 (12), 513, 2022 | 3 | 2022 |
| Progress in Photon Science DM Nikolaev, MS Panov, AA Shtyrov, VM Boitsov, SY Vyazmin, ... Springer, 2019 | 3 | 2019 |
| Fluorescence of the retinal chromophore in microbial and animal rhodopsins DM Nikolaev, AA Shtyrov, SY Vyazmin, AV Vasin, MS Panov, ... International Journal of Molecular Sciences 24 (24), 17269, 2023 | 1 | 2023 |
| Fluorescent 5H‐Pyrano[3,2‐c]chromenes: Synthesis, Photophysical Properties and Sensing of Nucleophilic Anions NM Chernov, MS Panov, MY Domotskaya, DV Spiridonova, LS Chistyi, ... ChemistrySelect 9 (4), e202304580, 2024 | | 2024 |
| Ruthenium-Based Electrode Modified by Gold Particles as Voltammetric Sensor for Non-Enzymatic Epinephrine Detection MS Panov, DM Nikolaev, AA Shtyrov, SY Vyazmin, AS Mereshchenko, ... | | 2023 |
| Electronic structure calculations and deuterium NMR spectroscopy reveal retinal mobility in rhodopsin activation SMDC Perera, A Erly, A Makara, DM Nikolaev, MN Ryazantsev, AV Struts, ... Biophysical Journal 122 (3), 195a, 2023 | | 2023 |
| For every retinylidene a force field: Using machine learning to improve molecular simulations of rhodopsins AM Erly, BI Gerber, RJ Li, FT Doole, DM Nikolaev, MN Ryazantsev, ... Biophysical Journal 122 (3), 199a, 2023 | | 2023 |
| Rational Design of Far-Red Archaerhodopsin-3-Based Fluorescent Genetically Encoded Voltage Indicators: from Elucidation of the Fluorescence Mechanism in Archers to Novel Red … DM Nikolaev, VN Mironov, EM Metelkina, AA Shtyrov, AS Mereshchenko, ... ACS Physical Chemistry Au, 2023 | | 2023 |
