| SM2miR: a database of the experimentally validated small molecules’ effects on microRNA expression X Liu, S Wang, F Meng, J Wang, Y Zhang, E Dai, X Yu, X Li, W Jiang Bioinformatics 29 (3), 409-411, 2013 | 175 | 2013 |
| Human embryonic stem cell-derived organoid retinoblastoma reveals a cancerous origin H Liu, Y Zhang, YY Zhang, YP Li, ZQ Hua, CJ Zhang, KC Wu, F Yu, ... Proceedings of the National Academy of Sciences 117 (52), 33628-33638, 2020 | 92 | 2020 |
| Identification of active transcription factor and miRNA regulatory pathways in Alzheimer’s disease W Jiang, Y Zhang, F Meng, B Lian, X Chen, X Yu, E Dai, S Wang, X Liu, ... Bioinformatics 29 (20), 2596-2602, 2013 | 78 | 2013 |
| Breast cancer prognosis signature: linking risk stratification to disease subtypes F Yu, F Quan, J Xu, Y Zhang, Y Xie, J Zhang, Y Lan, H Yuan, H Zhang, ... Briefings in bioinformatics 20 (6), 2130-2140, 2019 | 74 | 2019 |
| EpimiR: a database of curated mutual regulation between miRNAs and epigenetic modifications E Dai, X Yu, Y Zhang, F Meng, S Wang, X Liu, D Liu, J Wang, X Li, ... Database 2014, 2014 | 70 | 2014 |
| LincSNP 2.0: an updated database for linking disease-associated SNPs to human long non-coding RNAs and their TFBSs S Ning, M Yue, P Wang, Y Liu, H Zhi, Y Zhang, J Zhang, Y Gao, M Guo, ... Nucleic acids research, gkw945, 2016 | 65 | 2016 |
| Systematic characterization of circular RNA-associated CeRNA network identified novel circRNA biomarkers in Alzheimer's disease Y Zhang, F Yu, S Bao, J Sun Frontiers in Bioengineering and Biotechnology 7, 222, 2019 | 63 | 2019 |
| MSDD: a manually curated database of experimentally supported associations among miRNAs, SNPs and human diseases M Yue, D Zhou, H Zhi, P Wang, Y Zhang, Y Gao, M Guo, X Li, Y Wang, ... Nucleic acids research 46 (D1), D181-D185, 2018 | 50 | 2018 |
| Constructing and characterizing a bioactive small molecule and microRNA association network for Alzheimer's disease F Meng, E Dai, X Yu, Y Zhang, X Chen, X Liu, S Wang, L Wang, W Jiang Journal of The Royal Society Interface 11 (92), 20131057, 2014 | 47 | 2014 |
| Lnc2Meth: a manually curated database of regulatory relationships between long non-coding RNAs and DNA methylation associated with human disease H Zhi, X Li, P Wang, Y Gao, B Gao, D Zhou, Y Zhang, M Guo, M Yue, ... Nucleic Acids Research 46 (D1), D133-D138, 2018 | 45 | 2018 |
| Benchmarking algorithms for pathway activity transformation of single-cell RNA-seq data Y Zhang, Y Ma, Y Huang, Y Zhang, Q Jiang, M Zhou, J Su Computational and structural biotechnology journal 18, 2953-2961, 2020 | 43 | 2020 |
| LnChrom: a resource of experimentally validated lncRNA–chromatin interactions in human and mouse F Yu, G Zhang, A Shi, J Hu, F Li, X Zhang, Y Zhang, J Huang, Y Xiao, X Li, ... Database 2018, bay039, 2018 | 38 | 2018 |
| CFEA: a cell-free epigenome atlas in human diseases F Yu, K Li, S Li, J Liu, Y Zhang, M Zhou, H Zhao, H Chen, N Wu, Z Liu, ... Nucleic Acids Research 48 (D1), D40-D44, 2020 | 29 | 2020 |
| Inferences of individual drug responses across diverse cancer types using a novel competing endogenous RNA network Y Zhang, X Li, D Zhou, H Zhi, P Wang, Y Gao, M Guo, M Yue, Y Wang, ... Molecular Oncology 12 (9), 1429-1446, 2018 | 25 | 2018 |
| scTPA: a web tool for single-cell transcriptome analysis of pathway activation signatures Y Zhang, Y Zhang, J Hu, J Zhang, F Guo, M Zhou, G Zhang, F Yu, J Su Bioinformatics 36 (14), 4217-4219, 2020 | 22 | 2020 |
| Improved method for prioritization of disease associated lncRNAs based on ceRNA theory and functional genomics data P Wang, Q Guo, Y Gao, H Zhi, Y Zhang, Y Liu, J Zhang, M Yue, M Guo, ... Oncotarget 8 (3), 4642, 2017 | 21 | 2017 |
| Construction of a lncRNA-mediated feed-forward loop network reveals global topological features and prognostic motifs in human cancers S Ning, Y Gao, P Wang, X Li, H Zhi, Y Zhang, Y Liu, J Zhang, M Guo, ... Oncotarget 7 (29), 45937, 2016 | 20 | 2016 |
| TMREC: A Database of Transcription Factor and MiRNA Regulatory Cascades in Human Diseases S Wang, W Li, B Lian, X Liu, Y Zhang, E Dai, X Yu, F Meng, W Jiang, X Li PLoS One 10 (5), e0125222, 2015 | 19 | 2015 |
| Integrative analysis from multi‐centre studies identifies a function‐derived personalized multi‐gene signature of outcome in colorectal cancer J Sun, H Zhao, S Lin, S Bao, Y Zhang, J Su, M Zhou Journal of Cellular and Molecular Medicine 23 (8), 5270-5281, 2019 | 14 | 2019 |
| In vivo dissection of chamber-selective enhancers reveals estrogen-related receptor as a regulator of ventricular cardiomyocyte identity Y Cao, X Zhang, BN Akerberg, H Yuan, T Sakamoto, F Xiao, ... Circulation 147 (11), 881-896, 2023 | 13 | 2023 |
