Using nature’s “tricks” to rationally tune the binding properties of biomolecular receptors F Ricci, A Vallée-Bélisle, AJ Simon, A Porchetta, KW Plaxco Accounts of chemical research 49 (9), 1884-1892, 2016 | 135 | 2016 |
Chiral electronic transitions in fluorescent silver clusters stabilized by DNA SM Swasey, N Karimova, CM Aikens, DE Schultz, AJ Simon, EG Gwinn ACS nano 8 (7), 6883-6892, 2014 | 96 | 2014 |
Retrons and their applications in genome engineering AJ Simon, AD Ellington, IJ Finkelstein Nucleic acids research 47 (21), 11007-11019, 2019 | 80 | 2019 |
Supercharging enables organized assembly of synthetic biomolecules AJ Simon, Y Zhou, V Ramasubramani, J Glaser, A Pothukuchy, J Gollihar, ... Nature chemistry 11 (3), 204-212, 2019 | 79 | 2019 |
Synthetic evolution AJ Simon, S d’Oelsnitz, AD Ellington Nature Biotechnology 37 (7), 730-743, 2019 | 73 | 2019 |
Intrinsic disorder as a generalizable strategy for the rational design of highly responsive, allosterically cooperative receptors AJ Simon, A Vallée-Bélisle, F Ricci, KW Plaxco Proceedings of the National Academy of Sciences 111 (42), 15048-15053, 2014 | 70 | 2014 |
Activity modulation and allosteric control of a scaffolded DNAzyme using a dynamic DNA nanostructure X Mao, AJ Simon, H Pei, J Shi, J Li, Q Huang, KW Plaxco, C Fan Chemical science 7 (2), 1200-1204, 2016 | 56 | 2016 |
Effects of crowding on the stability of a surface-tethered biopolymer: an experimental study of folding in a highly crowded regime HM Watkins, AJ Simon, F Ricci, KW Plaxco Journal of the American Chemical Society 136 (25), 8923-8927, 2014 | 55 | 2014 |
Random coil negative control reproduces the discrepancy between scattering and FRET measurements of denatured protein dimensions HM Watkins, AJ Simon, TR Sosnick, EA Lipman, RP Hjelm, KW Plaxco Proceedings of the National Academy of Sciences 112 (21), 6631-6636, 2015 | 54 | 2015 |
Engineered yeast for enhanced CO 2 mineralization R Barbero, L Carnelli, A Simon, A Kao, AA Monforte, M Riccò, D Bianchi, ... Energy & environmental science 6 (2), 660-674, 2013 | 49 | 2013 |
Using the PopulationShift Mechanism to Rationally Introduce “Hilltype” Cooperativity into a Normally NonCooperative Receptor AJ Simon, A ValléeBélisle, F Ricci, HM Watkins, KW Plaxco Angewandte Chemie International Edition 53 (36), 9471-9475, 2014 | 48 | 2014 |
Retroelement-based genome editing and evolution AJ Simon, BR Morrow, AD Ellington ACS Synthetic Biology 7 (11), 2600-2611, 2018 | 44 | 2018 |
Recent advances in synthetic biosafety AJ Simon, AD Ellington F1000Research 5, 2016 | 24 | 2016 |
Exploiting the conformational-selection mechanism to control the response kinetics of a “smart” DNA hydrogel AJ Simon, LT Walls-Smith, KW Plaxco Analyst 143 (11), 2531-2538, 2018 | 20 | 2018 |
Simultaneous measurement of the dissolution kinetics of responsive DNA hydrogels at multiple length scales AJ Simon, LT Walls-Smith, MJ Freddi, FY Fong, V Gubala, KW Plaxco ACS nano 11 (1), 461-468, 2017 | 15 | 2017 |
Optimizing the specificity window of biomolecular receptors using structure-switching and allostery S Bissonnette, E Del Grosso, AJ Simon, KW Plaxco, F Ricci, ... ACS sensors 5 (7), 1937-1942, 2020 | 14 | 2020 |
Real Time in Vitro Regulation of DNA Methylation Using a 5-Fluorouracil Conjugated DNA-Based Stimuli-Responsive Platform X Mao, M Wei, C Zhu, J Lu, J Gao, AJ Simon, J Shi, Q Huang, C Fan ACS Applied Materials & Interfaces 5 (7), 2604-2609, 2013 | 7 | 2013 |
Employing 25-residue docking motifs from modular polyketide synthases as orthogonal protein connectors JL Meinke, AJ Simon, DT Wagner, BR Morrow, S You, AD Ellington, ... ACS synthetic biology 8 (9), 2017-2024, 2019 | 5 | 2019 |
Vallé e-Bé lisle, A., Ricci, F., and Plaxco, KW (2014). Intrinsic disorder as a generalizable strategy for the rational design of highly responsive, allosterically cooperative … AJ Simon Proc. Natl. Acad. Sci. USA 111, 15048-15053, 0 | 4 | |
Modeling the Self-Assembly of Super-Charged Green Fluorescent Proteins J Glaser, V Ramasubramani, AJ Simon, DW Taylor, AD Ellington, ... 2018 AIChE Annual Meeting, 2018 | | 2018 |