Jin Yu
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Fluorescence-force spectroscopy maps two-dimensional reaction landscape of the Holliday junction
S Hohng, R Zhou, MK Nahas, J Yu, K Schulten, DMJ Lilley, T Ha
Science 318 (5848), 279-283, 2007
PcrA helicase dismantles RecA filaments by reeling in DNA in uniform steps
J Park, S Myong, A Niedziela-Majka, KS Lee, J Yu, TM Lohman, T Ha
Cell 142 (4), 544-555, 2010
Mechanism of gating and ion conductivity of a possible tetrameric pore in aquaporin-1
J Yu, AJ Yool, K Schulten, E Tajkhorshid
Structure 14 (9), 1411-1423, 2006
Mechanochemistry of a viral DNA packaging motor
J Yu, J Moffitt, CL Hetherington, C Bustamante, G Oster
Journal of molecular biology 400 (2), 186-203, 2010
Double-stranded DNA dissociates into single strands when dragged into a poor solvent
S Cui, J Yu, F Kühner, K Schulten, HE Gaub
Journal of the American Chemical Society 129 (47), 14710-14716, 2007
Structure-based model of the stepping motor of PcrA helicase
J Yu, T Ha, K Schulten
Biophysical journal 91 (6), 2097-2114, 2006
How directional translocation is regulated in a DNA helicase motor
J Yu, T Ha, K Schulten
Biophysical journal 93 (11), 3783-3797, 2007
A small post-translocation energy bias aids nucleotide selection in T7 RNA polymerase transcription
J Yu, G Oster
Biophysical journal 102 (3), 532-541, 2012
Conformational model of the Holliday junction transition deduced from molecular dynamics simulations
J Yu, T Ha, K Schulten
Nucleic acids research 32 (22), 6683-6695, 2004
Protein denaturation at single-molecule level: the effect of nonpolar environments and its implications to the unfolding mechanism by proteases
B Cheng, S Wu, S Liu, P Rodriguez, J Yu, S Cui
Nanoscale, 2970-2977, 2015
A Critical Residue Selectively Recruits Nucleotides for T7 RNA Polymerase Transcription Fidelity Control
B Duan, S Wu, LT Da, J Yu
Biophysical Journal 107 (9), 2130-2140, 2014
A jump-from-cavity pyrophosphate ion release assisted by a key lysine residue in T7 RNA polymerase transcription elongation
LT Da, C E, B Duan, C Zhang, X Zhou, J Yu
PLoS computational biology 11 (11), e1004624, 2015
PcrA helicase, a molecular motor studied from the electronic to the functional level
M Dittrich, J Yu, K Schulten
Atomistic Approaches in Modern Biology, 319-347, 2006
Constructing kinetic models to elucidate structural dynamics of a complete RNA polymerase II elongation cycle
J Yu, LT Da, X Huang
Physical Biology 12, 016004, 2015
Coupling translocation with nucleic acid unwinding by NS3 helicase
J Yu, W Cheng, C Bustamante, G Oster
Journal of molecular biology 404 (3), 439-455, 2010
Structural mechanism for guanylate-binding proteins (GBPs) targeting by the Shigella E3 ligase IpaH9.8.
CJ Ji, S Du, P Li, Q Zhu, X Yang, C Long, J Yu, F Shao, J Xiao
PLOS Pathogens, https://doi.org/10.1371/journal.ppa, 2019
T7 RNA polymerase translocation is facilitated by a helix opening on the fingers domain that may also prevent backtracking
LT Da, C E, Y Shuan, S Wu, XD Su, J Yu
Nucleic Acids Research 45 (13), 7909-7921, 2017
Base-flipping dynamics from an intrahelical to an extrahelical state exerted by thymine DNA glycosylase during DNA repair process
LT Da, J Yu
Nucleic Acids Research, https://doi.org/10.1093/nar/gky386, 2018
Dynamics of the excised base release in thymine DNA glycosylase during DNA repair process
LT Da, Y Shi, G Ning, J Yu
Nucleic Acids Research, gkx1261, 2017
Classical characters of highly excited bend dynamics of acetylene in two coupled SU (2) coset spaces
J Yu, G Wu
The Journal of Chemical Physics 113 (2), 647-652, 2000
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