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Difei Wang, Ph.D.
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A community effort to assess and improve drug sensitivity prediction algorithms
JC Costello, LM Heiser, E Georgii, M Gönen, MP Menden, NJ Wang, ...
Nature biotechnology 32 (12), 1202-1212, 2014
7602014
Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection
AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, TN Yamaguchi, ...
Nature methods 12 (7), 623-630, 2015
3212015
Toward selective histone deacetylase inhibitor design: homology modeling, docking studies, and molecular dynamics simulations of human class I histone deacetylases
DF Wang, P Helquist, NL Wiech, O Wiest
Journal of medicinal chemistry 48 (22), 6936-6947, 2005
2612005
pH-Controlled Hydrogen Sulfide Release for Myocardial Ischemia-Reperfusion Injury
J Kang, Z Li, CL Organ, CM Park, C Yang, A Pacheco, D Wang, DJ Lefer, ...
Journal of the American Chemical Society 138 (20), 6336-6339, 2016
2342016
On the function of the 14 Å long internal cavity of histone deacetylase-like protein: implications for the design of histone deacetylase inhibitors
DF Wang, O Wiest, P Helquist, HY Lan-Hargest, NL Wiech
Journal of medicinal chemistry 47 (13), 3409-3417, 2004
1862004
A General Strategy for Development of Near‐Infrared Fluorescent Probes for Bioimaging
W Chen, S Xu, JJ Day, D Wang, M Xian
Angewandte Chemie 129, 16838-16842, 2017
1792017
Prediction of overall survival for patients with metastatic castration-resistant prostate cancer: development of a prognostic model through a crowdsourced challenge with open …
J Guinney, T Wang, TD Laajala, KK Winner, JC Bare, EC Neto, SA Khan, ...
Lancet Oncology 18 (1), 132-142, 2017
1612017
Thailandepsins: bacterial products with potent histone deacetylase inhibitory activities and broad-spectrum antiproliferative activities
C Wang, LM Henkes, LB Doughty, M He, D Wang, FJ Meyer-Almes, ...
Journal of natural products 74 (10), 2031-2038, 2011
1402011
Conformational features and anion-binding properties of calix [4] pyrrole: A theoretical study
YD Wu, DF Wang, JL Sessler
The Journal of organic chemistry 66 (11), 3739-3746, 2001
1332001
PGC1a Promoter Methylation in Parkinson’s Disease
X Su, Y Chu, JH Kordower, B Li, H Cao, L Huang, M Nishida, L Song, ...
PLoS ONE 10, e0134087, 2015
1182015
Equilibrium acidities and homolytic bond dissociation energies (BDEs) of the acidic HN bonds in hydrazines and hydrazides
Y Zhao, FG Bordwell, JP Cheng, D Wang
Journal of the American Chemical Society 119 (39), 9125-9129, 1997
931997
First demonstration of antigen induced cytokine expression by CD4-1+ lymphocytes in a poikilotherm: Studies in zebrafish (Danio rerio)
S Yoon, S Mitra, C Wyse, A Alnabulsi, J Zou, EM Weerdenburg, ...
PLoS ONE 10 (6), e0126378, 2015
912015
Zinc binding in HDAC inhibitors: a DFT study
D Wang, P Helquist, O Wiest
The Journal of organic chemistry 72 (14), 5446-5449, 2007
742007
Whole genome sequencing of skull-base chordoma reveals genomic alterations associated with recurrence and chordoma-specific survival
J Bai, J Shi, C Li, S Wang, T Zhang, X Hua, B Zhu, H Koka, HH Wu, ...
Nature communications 12 (1), 1-13, 2021
652021
Immune gene expression profiling reveals heterogeneity in luminal breast tumors
B Zhu, LA Tse, D Wang, H Koka, T Zhang, M Abubakar, P Lee, F Wang, ...
Breast Cancer Research 21 (1), 1-11, 2019
592019
QSAR studies of PC-3 cell line inhibition activity of TSA and SAHA-like hydroxamic acids
DF Wang, O Wiest, P Helquist, HY Lan-Hargest, NL Wiech
Bioorganic & medicinal chemistry letters 14 (3), 707-711, 2004
592004
Computational studies on the histone deacetylases and the design of selective histone deacetylase inhibitors
D Wang
Current topics in medicinal chemistry 9 (3), 241, 2009
582009
Sequence-dependent Kink-and-Slide deformations of nucleosomal DNA facilitated by histone arginines bound in the minor groove
D Wang, NB Ulyanov, VB Zhurkin
Journal of Biomolecular Structure and Dynamics 27 (6), 843-859, 2010
502010
p53 binding to nucleosomal DNA depends on the rotational positioning of DNA response element
G Sahu, D Wang, CB Chen, VB Zhurkin, RE Harrington, E Appella, ...
Journal of biological chemistry 285 (2), 1321-1332, 2010
482010
Combining accurate tumor genome simulation with crowdsourcing to benchmark somatic structural variant detection
AY Lee, AD Ewing, K Ellrott, Y Hu, KE Houlahan, JC Bare, SMG Espiritu, ...
Genome biology 19 (1), 188, 2018
472018
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