| Characterization of orally efficacious influenza drug with high resistance barrier in ferrets and human airway epithelia M Toots, JJ Yoon, RM Cox, M Hart, ZM Sticher, N Makhsous, R Plesker, ... Science translational medicine 11 (515), eaax5866, 2019 | 311 | 2019 |
| Prolonged shedding of human coronavirus in hematopoietic cell transplant recipients: risk factors and viral genome evolution C Ogimi, AL Greninger, AA Waghmare, JM Kuypers, RC Shean, H Xie, ... The Journal of infectious diseases 216 (2), 203-209, 2017 | 79 | 2017 |
| Metagenomic analysis reveals clinical SARS-CoV-2 infection and bacterial or viral superinfection and colonization V Peddu, RC Shean, H Xie, L Shrestha, GA Perchetti, SS Minot, ... Clinical chemistry 66 (7), 966-972, 2020 | 65 | 2020 |
| VAPiD: a lightweight cross-platform viral annotation pipeline and identification tool to facilitate virus genome submissions to NCBI GenBank RC Shean, N Makhsous, GD Stoddard, MJ Lin, AL Greninger BMC bioinformatics 20, 1-8, 2019 | 55 | 2019 |
| Viral entry properties required for fitness in humans are lost through rapid genomic change during viral isolation S Iketani, RC Shean, M Ferren, N Makhsous, DB Aquino, A Des Georges, ... MBio 9 (4), 10.1128/mbio. 00898-18, 2018 | 27 | 2018 |
| Cell free DNA from respiratory pathogens is detectable in the blood plasma of cystic fibrosis patients SLR Barrett, EA Holmes, DR Long, RC Shean, GE Bautista, ... Scientific reports 10 (1), 6903, 2020 | 23 | 2020 |
| Distribution of Staphylococcus species in dairy cows, workers and shared farm environments MC Roberts, G Garland-Lewis, S Trufan, SJ Meschke, H Fowler, ... FEMS microbiology letters 365 (15), fny146, 2018 | 17 | 2018 |
| CrAssphage and its bacterial host in cat feces Y Li, E Gordon, RC Shean, A Idle, X Deng, AL Greninger, E Delwart Scientific reports 11 (1), 815, 2021 | 16 | 2021 |
| Genome sequences of three novel bunyaviruses, two novel rhabdoviruses, and one novel nyamivirus from Washington State moths N Makhsous, RC Shean, D Droppers, J Guan, KR Jerome, AL Greninger Genome Announcements 5 (7), 10.1128/genomea. 01668-16, 2017 | 16 | 2017 |
| NCBI’s virus discovery Hackathon: Engaging research communities to identify cloud infrastructure requirements R Connor, R Brister, JP Buchmann, W Deboutte, R Edwards, ... Genes 10 (9), 714, 2019 | 13 | 2019 |
| Human parainfluenza virus evolution during lung infection of immunocompromised individuals promotes viral persistence AL Greninger, K Rybkina, MJ Lin, J Drew-Bear, TC Marcink, RC Shean, ... The Journal of Clinical Investigation 131 (23), 2021 | 12 | 2021 |
| LAVA: a streamlined visualization tool for longitudinal analysis of viral alleles MJ Lin, RC Shean, N Makhsous, AL Greninger BioRxiv, 2019.12. 17.879320, 2019 | 10 | 2019 |
| Private collection: high correlation of sample collection and patient admission date in clinical microbiological testing complicates sharing of phylodynamic metadata RC Shean, AL Greninger Virus evolution 4 (1), vey005, 2018 | 9 | 2018 |
| One future of clinical metagenomic sequencing for infectious diseases RC Shean, AL Greninger Expert Review of Molecular Diagnostics 19 (10), 849-851, 2019 | 6 | 2019 |
| Myeloablation-associated deletion of ORF4 in a human coronavirus 229E infection AL Greninger, G Pepper, RC Shean, A Cent, I Palileo, JM Kuypers, ... NPJ Genomic Medicine 2 (1), 30, 2017 | 6 | 2017 |
| Draft genome sequences of six novel Picorna-like viruses from Washington state spiders RC Shean, N Makhsous, RL Crawford, KR Jerome, AL Greninger Genome announcements 5 (9), 10.1128/genomea. 01705-16, 2017 | 6 | 2017 |
| NCBI’s Virus Discovery Hackathon: Engaging Research Communities to Identify Cloud Infrastructure Requirements. Genes 10 R Connor, R Brister, JP Buchmann, W Deboutte, R Edwards, ... | 5 | 2019 |
| Consensus machine learning for gene target selection in pediatric AML risk J Smith, SK Maden, D Lee, R Buie, V Peddu, R Shean, B Busby bioRxiv, 632166, 2019 | 2 | 2019 |
| Repeat testing of mpox specimens with late CTs improves detection of potential false positive cases RC Shean, WC Hymas, J Klein, M Pyne, DR Hillyard, BT Bradley Journal of Clinical Microbiology, e01275-23, 2024 | | 2024 |
| Impact of Diagnostic Stewardship on Ordering Trends and Pathogen Yield from mNGS Studies RC Shean, E Garrett, J Malleis, JA Lieberman, BT Bradley medRxiv, 2024.04. 19.24306038, 2024 | | 2024 |
