Molecular structure, DNA binding mode, photophysical properties and recommendations for use of SYBR Gold PJ Kolbeck, W Vanderlinden, G Gemmecker, C Gebhardt, M Lehmann, ... Nucleic acids research 49 (9), 5143-5158, 2021 | 44 | 2021 |
The free energy landscape of retroviral integration W Vanderlinden, T Brouns, PU Walker, PJ Kolbeck, LF Milles, W Ott, ... Nature communications 10 (1), 4738, 2019 | 18 | 2019 |
DNA fluctuations reveal the size and dynamics of topological domains W Vanderlinden, E Skoruppa, PJ Kolbeck, E Carlon, J Lipfert PNAS nexus 1 (5), pgac268, 2022 | 9 | 2022 |
DNA origami fiducial for accurate 3D atomic force microscopy imaging PJ Kolbeck, M Dass, IV Martynenko, RJA van Dijk-Moes, KJH Brouwer, ... Nano Letters 23 (4), 1236-1243, 2023 | 8 | 2023 |
Ru (TAP) 32+ uses multivalent binding to accelerate and constrain photo-adduct formation on DNA W Vanderlinden, PJ Kolbeck, W Frederickx, SF Konrad, T Nicolaus, ... Chemical communications 55 (60), 8764-8767, 2019 | 8 | 2019 |
A benchmark data set for the mechanical properties of double-stranded DNA and RNA under torsional constraint W Vanderlinden, PJ Kolbeck, F Kriegel, PU Walker, J Lipfert Data in brief 30, 105404, 2020 | 7 | 2020 |
High-yield ligation-free assembly of DNA constructs with nucleosome positioning sequence repeats for single-molecule manipulation assays YY Lin, T Brouns, PJ Kolbeck, W Vanderlinden, J Lipfert Journal of Biological Chemistry 299 (7), 2023 | 3 | 2023 |
Supercoiling-dependent DNA binding: quantitative modeling and applications to bulk and single-molecule experiments PJ Kolbeck, M Tišma, BT Analikwu, W Vanderlinden, C Dekker, J Lipfert Nucleic acids research 52 (1), 59-72, 2024 | 2 | 2024 |
Thermally Switchable Nanogate Based on Polymer Phase Transition PJ Kolbeck, D Benaoudia, L Chazot-Franguiadakis, G Delecourt, J Mathé, ... Nano Letters 23 (11), 4862-4869, 2023 | 2 | 2023 |
A DNA origami fiducial for accurate 3D AFM imaging PJ Kolbeck, M Dass, IV Martynenko, RJA van Dijk-Moes, KJH Brouwer, ... bioRxiv, 2022.11. 11.516090, 2022 | 2 | 2022 |
Intercalative DNA binding governs fluorescence enhancement of SYBR Gold PJ Kolbeck, W Vanderlinden, T Nicolaus, C Gebhardt, T Cordes, J Lipfert bioRxiv, 2020.05. 23.112631, 2020 | 2 | 2020 |
Phase transitions in linear polymers PJ Kolbeck lmu, 2024 | | 2024 |
Exploring protein-mediated compaction of DNA by coarse-grained simulations and unsupervised learning M de Jager, PJ Kolbeck, W Vanderlinden, J Lipfert, L Filion bioRxiv, 2024.03. 28.587201, 2024 | | 2024 |
HIV integrase compacts viral DNA into biphasic condensates PJ Kolbeck, M de Jager, M Gallano, T Brouns, B Bekaert, W Frederickx, ... bioRxiv, 2024.03. 15.585256, 2024 | | 2024 |
Nanopore-based consensus sequencing enables accurate multimodal tumor cell-free DNA profiling LT Chen, M Jager, D Rebergen, GJ Brink, T van den Ende, ... bioRxiv, 2024.02. 16.580684, 2024 | | 2024 |
Cooperative dynamics of DNA-grafted magnetic nanoparticles optimize magnetic biosensing and coupling to DNA origami A Lak, Y Wang, PJ Kolbeck, C Pauer, MS Chowdhury, M Cassani, ... Nanoscale 16 (15), 7678-7689, 2024 | | 2024 |
DNA in the spotlight: visualization, quantification, and manipulation of DNA with small molecule intercalators PJ Kolbeck Utrecht University, 2023 | | 2023 |
The Free Energy Landscape of Retroviral Integration and Molecular Mechanisms of DNA Compaction W Vanderlinden, PJ Kolbeck, T Brouns, Z Debyser, J Lipfert Biophysical Journal 118 (3), 375a-376a, 2020 | | 2020 |
Mimicking nucleopore by track-etched polycarbonate membranes modified by poly (2-alkyloxazoline) P Guegan, D Benaoudia, P Kolbeck, S Li, V Bennevault, J Mathe, ... ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 257, 2019 | | 2019 |
TRACK-ETCHED POLYCARBONATE MEMBRANES MODIFIED BY POLYALKYLOXAZOLINE TO MIMICK NUCLEOPORE D Benaoudia, P Kolbeck, S Li, V Bennevault, J Mathé, F Montel, ... | | |