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Pauline J. Kolbeck
Pauline J. Kolbeck
PhD from Faculty of Physics LMU Munich, Germany & Utrecht University, the Netherlands
Verified email at physik.uni-muenchen.de
Title
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Cited by
Year
Molecular structure, DNA binding mode, photophysical properties and recommendations for use of SYBR Gold
PJ Kolbeck, W Vanderlinden, G Gemmecker, C Gebhardt, M Lehmann, ...
Nucleic acids research 49 (9), 5143-5158, 2021
442021
The free energy landscape of retroviral integration
W Vanderlinden, T Brouns, PU Walker, PJ Kolbeck, LF Milles, W Ott, ...
Nature communications 10 (1), 4738, 2019
182019
DNA fluctuations reveal the size and dynamics of topological domains
W Vanderlinden, E Skoruppa, PJ Kolbeck, E Carlon, J Lipfert
PNAS nexus 1 (5), pgac268, 2022
92022
DNA origami fiducial for accurate 3D atomic force microscopy imaging
PJ Kolbeck, M Dass, IV Martynenko, RJA van Dijk-Moes, KJH Brouwer, ...
Nano Letters 23 (4), 1236-1243, 2023
82023
Ru (TAP) 32+ uses multivalent binding to accelerate and constrain photo-adduct formation on DNA
W Vanderlinden, PJ Kolbeck, W Frederickx, SF Konrad, T Nicolaus, ...
Chemical communications 55 (60), 8764-8767, 2019
82019
A benchmark data set for the mechanical properties of double-stranded DNA and RNA under torsional constraint
W Vanderlinden, PJ Kolbeck, F Kriegel, PU Walker, J Lipfert
Data in brief 30, 105404, 2020
72020
High-yield ligation-free assembly of DNA constructs with nucleosome positioning sequence repeats for single-molecule manipulation assays
YY Lin, T Brouns, PJ Kolbeck, W Vanderlinden, J Lipfert
Journal of Biological Chemistry 299 (7), 2023
32023
Supercoiling-dependent DNA binding: quantitative modeling and applications to bulk and single-molecule experiments
PJ Kolbeck, M Tišma, BT Analikwu, W Vanderlinden, C Dekker, J Lipfert
Nucleic acids research 52 (1), 59-72, 2024
22024
Thermally Switchable Nanogate Based on Polymer Phase Transition
PJ Kolbeck, D Benaoudia, L Chazot-Franguiadakis, G Delecourt, J Mathé, ...
Nano Letters 23 (11), 4862-4869, 2023
22023
A DNA origami fiducial for accurate 3D AFM imaging
PJ Kolbeck, M Dass, IV Martynenko, RJA van Dijk-Moes, KJH Brouwer, ...
bioRxiv, 2022.11. 11.516090, 2022
22022
Intercalative DNA binding governs fluorescence enhancement of SYBR Gold
PJ Kolbeck, W Vanderlinden, T Nicolaus, C Gebhardt, T Cordes, J Lipfert
bioRxiv, 2020.05. 23.112631, 2020
22020
Phase transitions in linear polymers
PJ Kolbeck
lmu, 2024
2024
Exploring protein-mediated compaction of DNA by coarse-grained simulations and unsupervised learning
M de Jager, PJ Kolbeck, W Vanderlinden, J Lipfert, L Filion
bioRxiv, 2024.03. 28.587201, 2024
2024
HIV integrase compacts viral DNA into biphasic condensates
PJ Kolbeck, M de Jager, M Gallano, T Brouns, B Bekaert, W Frederickx, ...
bioRxiv, 2024.03. 15.585256, 2024
2024
Nanopore-based consensus sequencing enables accurate multimodal tumor cell-free DNA profiling
LT Chen, M Jager, D Rebergen, GJ Brink, T van den Ende, ...
bioRxiv, 2024.02. 16.580684, 2024
2024
Cooperative dynamics of DNA-grafted magnetic nanoparticles optimize magnetic biosensing and coupling to DNA origami
A Lak, Y Wang, PJ Kolbeck, C Pauer, MS Chowdhury, M Cassani, ...
Nanoscale 16 (15), 7678-7689, 2024
2024
DNA in the spotlight: visualization, quantification, and manipulation of DNA with small molecule intercalators
PJ Kolbeck
Utrecht University, 2023
2023
The Free Energy Landscape of Retroviral Integration and Molecular Mechanisms of DNA Compaction
W Vanderlinden, PJ Kolbeck, T Brouns, Z Debyser, J Lipfert
Biophysical Journal 118 (3), 375a-376a, 2020
2020
Mimicking nucleopore by track-etched polycarbonate membranes modified by poly (2-alkyloxazoline)
P Guegan, D Benaoudia, P Kolbeck, S Li, V Bennevault, J Mathe, ...
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 257, 2019
2019
TRACK-ETCHED POLYCARBONATE MEMBRANES MODIFIED BY POLYALKYLOXAZOLINE TO MIMICK NUCLEOPORE
D Benaoudia, P Kolbeck, S Li, V Bennevault, J Mathé, F Montel, ...
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