Microreact: visualizing and sharing data for genomic epidemiology and phylogeography S Argimón, K Abudahab, RJE Goater, A Fedosejev, J Bhai, C Glasner, ... Microbial genomics 2 (11), e000093, 2016 | 601 | 2016 |
Epidemic of carbapenem-resistant Klebsiella pneumoniae in Europe is driven by nosocomial spread S David, S Reuter, SR Harris, C Glasner, T Feltwell, S Argimon, ... Nature microbiology 4 (11), 1919-1929, 2019 | 546 | 2019 |
Phandango: an interactive viewer for bacterial population genomics J Hadfield, NJ Croucher, RJ Goater, K Abudahab, DM Aanensen, ... Bioinformatics 34 (2), 292-293, 2018 | 517 | 2018 |
Whole-genome sequencing for routine pathogen surveillance in public health: a population snapshot of invasive Staphylococcus aureus in Europe DM Aanensen, EJ Feil, MTG Holden, J Dordel, CA Yeats, A Fedosejev, ... MBio 7 (3), 10.1128/mbio. 00444-16, 2016 | 211 | 2016 |
Public health surveillance of multidrug-resistant clones of Neisseria gonorrhoeae in Europe: a genomic survey SR Harris, MJ Cole, G Spiteri, L Sánchez-Busó, D Golparian, ... The Lancet Infectious Diseases 18 (7), 758-768, 2018 | 194 | 2018 |
Genomic reconstruction of the SARS-CoV-2 epidemic in England HS Vöhringer, T Sanderson, M Sinnott, N De Maio, T Nguyen, R Goater, ... Nature 600 (7889), 506-511, 2021 | 85 | 2021 |
A community-driven resource for genomic epidemiology and antimicrobial resistance prediction of Neisseria gonorrhoeae at Pathogenwatch L Sánchez-Busó, CA Yeats, B Taylor, RJ Goater, A Underwood, ... Genome medicine 13, 1-22, 2021 | 72 | 2021 |
A global resource for genomic predictions of antimicrobial resistance and surveillance of Salmonella Typhi at pathogenwatch S Argimón, CA Yeats, RJ Goater, K Abudahab, B Taylor, A Underwood, ... Nature communications 12 (1), 2879, 2021 | 59 | 2021 |
Rapid Genomic Characterization and Global Surveillance of Klebsiella Using Pathogenwatch S Argimón, S David, A Underwood, M Abrudan, NE Wheeler, M Kekre, ... Clinical Infectious Diseases 73 (Supplement_4), S325-S335, 2021 | 51 | 2021 |
Epidemic of carbapenem-resistant Klebsiella pneumoniae in Europe is driven by nosocomial spread. Nat Microbiol 4: 1919–1929 S David, S Reuter, SR Harris, C Glasner, T Feltwell, S Argimon, ... | 48 | 2019 |
Visualizing variation within Global Pneumococcal Sequence Clusters (GPSCs) and country population snapshots to contextualize pneumococcal isolates RA Gladstone, SW Lo, R Goater, C Yeats, B Taylor, J Hadfield, JA Lees, ... Microbial genomics 6 (5), e000357, 2020 | 28 | 2020 |
Globetrotting strangles: the unbridled national and international transmission of Streptococcus equi between horses C Mitchell, KF Steward, ARL Charbonneau, S Walsh, H Wilson, ... Microbial genomics 7 (3), 000528, 2021 | 24 | 2021 |
Microreact: visualizing and sharing data for genomic epidemiology and phylogeography. Microb Genom. 2016; 2 (11): e000093 S Argimón, K Abudahab, RJE Goater, A Fedosejev, J Bhai, C Glasner Epub 2017/03/30. https://doi. org/10.1099/mgen. 0.000093 PMID: 28348833, 0 | 15 | |
Genomic reconstruction of the SARS-CoV-2 epidemic across England from September 2020 to May 2021 HS Vöhringer, T Sanderson, M Sinnott, N De Maio, T Nguyen, R Goater, ... medRxiv, 2021.05. 22.21257633, 2021 | 11 | 2021 |
European, SRLWG, 2016 DM Aanensen, EJ Feil, MT Holden, J Dordel, CA Yeats, A Fedosejev, ... Whole-genome sequencing for routine pathogen surveillance in public health …, 0 | 10 | |
Publisher Correction: Genomic reconstruction of the SARS CoV-2 epidemic in England HS Vöhringer, T Sanderson, M Sinnott, N De Maio, T Nguyen, R Goater, ... Nature 606 (7915), E18-E18, 2022 | | 2022 |
Genomic reconstruction of the SARS CoV-2 epidemic in England (vol 600, pg 506, 2021) HS Vohringer, T Sanderson, M Sinnott, N De Maio, T Nguyen, R Goater, ... NATURE, 2022 | | 2022 |
Additional file 2 of A community-driven resource for genomic epidemiology and antimicrobial resistance prediction of Neisseria gonorrhoeae at Pathogenwatch DM Aanensen, K Abudahab, S Argimón, MJ Cole, RJ Goater, D Golparian, ... | | 2021 |
Genomic reconstruction of the SARS-CoV-2 epidemic across England from September 2020 to May 2021 (preprint) HS Vohringer, T Sanderson, M Sinnott, N De Maio, T Nguyen, R Goater, ... | | 2021 |
Globetrotting strangles: the unbridled national and international transmission of Streptococcus equi between horses H Wilson, C Mitchell, KF Steward, ARL Charbonneau, S Walsh, ... 11th International Equine Infectious Diseases Conference 53 (S56), 20-21, 2021 | | 2021 |