Genomic analysis of P elements in natural populations of Drosophila melanogaster CM Bergman, S Han, MG Nelson, V Bondarenko, I Kozeretska PeerJ 5, e3824, 2017 | 17 | 2017 |
Transposable element profiles reveal cell line identity and loss of heterozygosity in Drosophila cell culture S Han, PJ Basting, GB Dias, A Luhur, AC Zelhof, CM Bergman Genetics 219 (2), iyab113, 2021 | 14 | 2021 |
Local assembly of long reads enables phylogenomics of transposable elements in a polyploid cell line S Han, GB Dias, PJ Basting, R Viswanatha, N Perrimon, CM Bergman Nucleic Acids Res. 50, gkac794, 2022 | 11 | 2022 |
A novel transposable element-based authentication protocol for Drosophila cell lines D Mariyappa, DB Rusch, S Han, A Luhur, D Overton, DFB Miller, ... G3 12 (2), jkab403, 2022 | 6 | 2022 |
Ongoing transposition in cell culture reveals the phylogeny of diverse Drosophila S2 sub-lines. S Han, GB Dias, PJ Basting, MG Nelson, S Patel, M Marzo, CM Bergman Genetics, iyac077, 2022 | 5 | 2022 |
Reproducible evaluation of transposable element detectors with McClintock 2 guides accurate inference of Ty insertion patterns in yeast J Chen, PJ Basting, S Han, DJ Garfinkel, CM Bergman Mobile DNA 14 (1), 8, 2023 | 4 | 2023 |
Methods and systems for determining copy number variant genotypes S Han, VF Onuchic, X Chen WO Patent WO2024010812A2, 2024 | | 2024 |
Benchmarking of Germline Copy Number Variant Callers from Whole Genome Sequencing Data for Clinical Applications FM De La Vega, SA Irvine, P Anur, K Potts, L Kraft, R Torres, P Kang, ... medRxiv, 2024.07. 12.24310338, 2024 | | 2024 |
Novel computational strategies for the analysis of transposable elements in Drosophila cell culture genomes S Han University of Georgia, 2021 | | 2021 |