| Conserved recombination patterns across coronavirus subgenera A de Klerk, P Swanepoel, R Lourens, M Zondo, I Abodunran, S Lytras, ... Virus Evolution 8 (2), veac054, 2022 | 17 | 2022 |
| Recent zoonotic spillover and tropism shift of a canine coronavirus is associated with relaxed selection and putative loss of function in NTD subdomain of spike protein JD Zehr, SLK Pond, DP Martin, K Ceres, GR Whittaker, JK Millet, ... Viruses 14 (5), 853, 2022 | 12 | 2022 |
| Genomes of endangered great hammerhead and shortfin mako sharks reveal historic population declines and high levels of inbreeding in great hammerhead MJ Stanhope, KM Ceres, Q Sun, M Wang, JD Zehr, NJ Marra, AP Wilder, ... Iscience 26 (1), 2023 | 5 | 2023 |
| Natural selection differences detected in key protein domains between non-pathogenic and pathogenic feline coronavirus phenotypes JD Zehr, SL Kosakovsky Pond, JK Millet, XA Olarte-Castillo, AG Lucaci, ... Virus Evolution 9 (1), vead019, 2023 | 5 | 2023 |
| Human HspB1, HspB3, HspB5 and HspB8: Shaping these disease factors during vertebrate evolution R Benndorf, R Velazquez, JD Zehr, SLK Pond, JL Martin, AG Lucaci Cell Stress and Chaperones 27 (4), 309-323, 2022 | 5 | 2022 |
| Temporal changes in antibiotic resistance and population structure of methicillin-resistant Staphylococcus pseudintermedius between 2010 and 2021 in the United States L Phophi, MA Abouelkhair, R Jones, J Zehr, SA Kania Comparative Immunology, Microbiology and Infectious Diseases 100, 102028, 2023 | 4 | 2023 |
| Evolutionary shortcuts via multinucleotide substitutions and their impact on natural selection analyses AG Lucaci, JD Zehr, D Enard, JW Thornton, SL Kosakovsky Pond Molecular Biology and Evolution 40 (7), msad150, 2023 | 3 | 2023 |
| RASCL: Rapid Assessment of Selection in CLades through molecular sequence analysis AG Lucaci, JD Zehr, SD Shank, D Bouvier, A Ostrovsky, H Mei, ... Plos one 17 (11), e0275623, 2022 | 3 | 2022 |
| RASCL: rapid assessment of SARS-CoV-2 clades through molecular sequence analysis AG Lucaci, JD Zehr, SD Shank, D Bouvier, H Mei, A Nekrutenko, ... BioRxiv, 2022 | 2 | 2022 |
| Data from: Evolutionary genomic analyses of canine E. coli infections identifies a relic capsular locus associated with resistance to multiple classes of antimicrobial drugs K Ceres, JD Zehr, C Murrell, JK Millet, Q Sun, HC McQueary, A Horton, ... | | 2024 |
| Fast and accurate genome-wide predictions and structural modeling of protein–protein interactions using Galaxy A Guerler, D Baker, M van den Beek, B Gruening, D Bouvier, N Coraor, ... BMC bioinformatics 24 (1), 263, 2023 | | 2023 |
| Patterns of Natural Selection Associated With Tropism Shifts in Animal Coronavirus Genomes JD Zehr Temple University, 2023 | | 2023 |
| Human HspB1, HspB3, HspB5 and HspB8 R Benndorf, R Velazquez, JD Zehr, SLK Pond, JL Martin, AG Lucaci Cell Stress & Chaperones 27 (4), 309-323, 2022 | | 2022 |
| RASCL: Rapid Assessment Of SARS-CoV-2 Clades Through Molecular Sequence Analysis (preprint) AG Lucaci, JD Zehr, SD Shank, D Bouvier, H Mei, A Nekrutenko, ... | | 2022 |
| Conserved recombination patterns across coronavirus subgenera (preprint) A de Klerk, PI Swanepoel, RF Lourens, M Zondo, I Abodunran, S Lytras, ... | | 2021 |
| Rapid molecular sequence characterization of the SARS-CoV-2 variant of interest Lambda (C. 37) AG Lucaci, JD Zehr, SD Shank, S Weaver, D Bouvier, H Mei, ... | | |
