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Davide Bał
Davide Bał
Bioinformatics manager at Igenomix
Verified email at igenomix.com - Homepage
Title
Cited by
Cited by
Year
The three-dimensional folding of the α-globin gene domain reveals formation of chromatin globules
D Bał, A Sanyal, BR Lajoie, E Capriotti, M Byron, JB Lawrence, J Dekker, ...
Nature structural & molecular biology 18 (1), 107-114, 2011
3282011
Distinct structural transitions of chromatin topological domains correlate with coordinated hormone-induced gene regulation
F Le Dily, D Bau, A Pohl, GP Vicent, F Serra, D Soronellas, G Castellano, ...
Genes & development 28 (19), 2151-2162, 2014
2882014
The three-dimensional architecture of a bacterial genome and its alteration by genetic perturbation
MA Umbarger, E Toro, MA Wright, GJ Porreca, D Bau, SH Hong, MJ Fero, ...
Molecular cell 44 (2), 252-264, 2011
2702011
Automatic analysis and 3D-modelling of Hi-C data using TADbit reveals structural features of the fly chromatin colors
F Serra, D Bał, M Goodstadt, D Castillo, GJ Filion, MA Marti-Renom
PLoS computational biology 13 (7), e1005665, 2017
2142017
Distill: a suite of web servers for the prediction of one-, two-and three-dimensional structural features of proteins
D Baś, AJM Martin, C Mooney, A Vullo, I Walsh, G Pollastri
BMC bioinformatics 7 (1), 1-8, 2006
1042006
Restraint-based three-dimensional modeling of genomes and genomic domains
F Serra, M Di Stefano, YG Spill, Y Cuartero, M Goodstadt, D Bał, ...
FEBS letters 589 (20), 2987-2995, 2015
942015
Genome structure determination via 3C-based data integration by the Integrative Modeling Platform
D Bau, MA Marti-Renom
Methods 58 (3), 300-306, 2012
912012
Chromatin globules: a common motif of higher order chromosome structure?
A Sanyal, D Bał, MA Martķ-Renom, J Dekker
Current opinion in cell biology 23 (3), 325-331, 2011
892011
Defined chromosome structure in the genome-reduced bacterium Mycoplasma pneumoniae
M Trussart, E Yus, S Martinez, D Bau, YO Tahara, T Pengo, M Widjaja, ...
Nature communications 8 (1), 1-13, 2017
772017
Impact of fgd1 and ddn Diversity in Mycobacterium tuberculosis Complex on In Vitro Susceptibility to PA-824
S Feuerriegel, CU Köser, D Bau, S Rüsch-Gerdes, DK Summers, ...
Antimicrobial agents and chemotherapy 55 (12), 5718-5722, 2011
682011
Structure determination of genomic domains by satisfaction of spatial restraints
D Bał, MA Marti-Renom
Chromosome research 19 (1), 25-35, 2011
632011
Ab initio and template-based prediction of multi-class distance maps by two-dimensional recursive neural networks
I Walsh, D Bał, AJM Martin, C Mooney, A Vullo, G Pollastri
BMC structural biology 9 (1), 1-20, 2009
622009
Assessing the limits of restraint-based 3D modeling of genomes and genomic domains
M Trussart, F Serra, D Bau, I Junier, L Serrano, MA Marti-Renom
Nucleic acids research 43 (7), 3465-3477, 2015
562015
Structural features of the fly chromatin colors revealed by automatic three-dimensional modeling
F Serra, D Bał, G Filion, MA Marti-Renom
bioRxiv, 036764, 2016
342016
The conformation of yeast chromosome III is mating type dependent and controlled by the recombination enhancer
JM Belton, BR Lajoie, S Audibert, S Cantaloube, I Lassadi, I Goiffon, ...
Cell reports 13 (9), 1855-1867, 2015
342015
Refinement of unbound protein docking studies using biological knowledge
P Heuser, D Bau, P Benkert, D Schomburg
PROTEINS: Structure, Function, and Bioinformatics 61 (4), 1059-1067, 2005
152005
DISTILL: A MACHINE LEARNING APPROACH TO AB INITIO PROTEIN STRUCTURE PREDICTION
G Pollastri, D Baś, A Vullo
Analysis of biological data: a soft computing approach, 153-181, 2007
112007
Long-range information and physicality constraints improve predicted protein contact maps
AJM Martin, D Bau, A Vullo, I Walsh, G Pollastri
Journal of Bioinformatics and Computational Biology 6 (05), 1001-1020, 2008
52008
Impact of chromosome fusions on 3D genome organization and gene expression in budding yeast
M Di Stefano, F Di Giovanni, V Pozharskaia, M Gomar-Alba, D Bał, ...
Genetics 214 (3), 651-667, 2020
32020
Impact of chromosome fusions on 3D genome organization and gene expression in budding yeast
M Di Stefano, F Di Giovanni, D Bał, LB Carey, MA Marti-Renom, ...
bioRxiv, 237263, 2018
12018
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