| esATAC: an easy-to-use systematic pipeline for ATAC-seq data analysis Z Wei, W Zhang, H Fang, Y Li, X Wang Bioinformatics 34 (15), 2664-2665, 2018 | 51 | 2018 |
| Genome-wide cell-free DNA methylation analyses improve accuracy of non-invasive diagnostic imaging for early-stage breast cancer J Liu, H Zhao, Y Huang, S Xu, Y Zhou, W Zhang, J Li, Y Ming, X Wang, ... Molecular cancer 20, 1-7, 2021 | 42 | 2021 |
| DISMIR: Deep learning-based noninvasive cancer detection by integrating DNA sequence and methylation information of individual cell-free DNA reads J Li, L Wei, X Zhang, W Zhang, H Wang, B Zhong, Z Xie, H Lv, X Wang Briefings in bioinformatics 22 (6), bbab250, 2021 | 27 | 2021 |
| HCSGD: an integrated database of human cellular senescence genes Q Dong, H Han, X Liu, L Wei, W Zhang, Z Zhao, MQ Zhang, X Wang Journal of Genetics and Genomics 44 (5), 227-234, 2017 | 14 | 2017 |
| ARIC: accurate and robust inference of cell type proportions from bulk gene expression or DNA methylation data W Zhang, H Xu, R Qiao, B Zhong, X Zhang, J Gu, X Zhang, L Wei, X Wang Briefings in Bioinformatics 23 (1), bbab362, 2022 | 10 | 2022 |
| Deep generative modeling and clustering of single cell Hi-C data Q Liu, W Zeng, W Zhang, S Wang, H Chen, R Jiang, M Zhou, S Zhang Briefings in Bioinformatics 24 (1), bbac494, 2023 | 9 | 2023 |
| cfDNApipe: a comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data W Zhang, L Wei, J Huang, B Zhong, J Li, H Xu, S He, Y Liu, J Liu, H Lv, ... Bioinformatics 37 (22), 4251-4252, 2021 | 5 | 2021 |
| Ribosomal DNA methylation as stable biomarkers for detection of cancer in plasma X Zhang, H Fang, W Zhang, B Zhong, Y Li, X Wang bioRxiv, 651497, 2019 | 3 | 2019 |
| Evaluating methylation of human ribosomal DNA at each CpG site reveals its utility for cancer detection using cell-free DNA X Zhang, X Jia, B Zhong, L Wei, J Li, W Zhang, H Fang, Y Li, Y Lu, ... Briefings in Bioinformatics 23 (4), bbac278, 2022 | 2 | 2022 |
| stGCL: A versatile cross-modality fusion method based on multi-modal graph contrastive learning for spatial transcriptomics N Yu, D Zhang, W Zhang, Z Liu, X Qiao, C Wang, M Zhao, B Chao, W Li, ... bioRxiv, 2023.12. 10.571025, 2023 | 1 | 2023 |
| 血浆游离 DNA 全基因组甲基化测序的实用稳定性评估 方欢， 钟碧溪， 魏磊， 张祥林， 张威， 汪小我 生物工程学报 35 (12), 2284-2294, 2019 | 1 | 2019 |
| SIP: An Interchangeable Pipeline for scRNA-seq Data Processing S Chen, Z Wei, Y Chen, K Hua, W Zhang, C Liu, H Gao, H Sun, Z Wang, ... bioRxiv, 456772, 2018 | | 2018 |
