| DRAM for distilling microbial metabolism to automate the curation of microbiome function M Shaffer, MA Borton, BB McGivern, AA Zayed, SL La Rosa, LM Solden, ... Nucleic acids research 48 (16), 8883-8900, 2020 | 616 | 2020 |
| Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils G Trubl, S Roux, N Solonenko, YF Li, B Bolduc, J Rodríguez-Ramos, ... PeerJ 7, e7265, 2019 | 65 | 2019 |
| Integrated, coordinated, open, and networked (ICON) science to advance the geosciences: Introduction and synthesis of a special collection of commentary articles AE Goldman, SR Emani, LC Pérez‐Angel, JA Rodríguez‐Ramos, ... Earth and Space Science 9 (4), e2021EA002099, 2022 | 29 | 2022 |
| Genome-resolved metaproteomics decodes the microbial and viral contributions to coupled carbon and nitrogen cycling in river sediments JA Rodríguez-Ramos, MA Borton, BB McGivern, GJ Smith, LM Solden, ... Msystems 7 (4), e00516-22, 2022 | 18 | 2022 |
| Human-gut phages harbor sporulation genes DA Schwartz, JA Rodríguez-Ramos, M Shaffer, RM Flynn, RA Daly, ... Mbio 14 (3), e00182-23, 2023 | 8 | 2023 |
| Exposing new taxonomic variation with inflammation—a murine model-specific genome database for gut microbiome researchers I Leleiwi, J Rodriguez-Ramos, M Shaffer, A Sabag-Daigle, K Kokkinias, ... Microbiome 11 (1), 114, 2023 | 5 | 2023 |
| Perceived Costs and Benefits of ICON Science and Foundational Documents associated with “Integrated, Coordinated, Open, and Networked (ICON) Science to Advance the Geosciences … AE Goldman, SR Emani, LC Pérez-Angel, JA Rodríguez-Ramos, ... Environmental System Science Data Infrastructure for a Virtual Ecosystem …, 2022 | 2 | 2022 |
| Spatial and temporal metagenomics of river compartments reveals viral community dynamics in an urban impacted stream J Rodríguez-Ramos, A Oliverio, MA Borton, R Danczak, BM Mueller, ... Frontiers in Microbiomes 2, 1199766, 2023 | 1 | 2023 |
| Microbial genome-resolved metaproteomic analyses frame intertwined carbon and nitrogen cycles in river hyporheic sediments JA Rodríguez-Ramos, MA Borton, BB McGivern, GJ Smith, LM Solden, ... | 1 | 2021 |
| Sea cucumber (Holothuria glaberrima) intestinal microbiome dataset from Puerto Rico, generated by shotgun sequencing EO Rivera-Lopez, R Nieves-Morales, G Melendez-Martinez, ... Data in Brief 54, 110421, 2024 | | 2024 |
| Untargeted, tandem mass spectrometry metaproteome of Columbia River sediments J Rodríguez-Ramos, CD Nicora, SO Purvine, MA Borton, BB McGivern, ... Microbiology Resource Announcements, e00033-24, 2024 | | 2024 |
| Environmental matrix and moisture are key determinants of microbial phenotypes expressed in a reduced complexity soil-analog JA Rodríguez-Ramos, N Sadler, EK Zageye, Y Farris, SO Purvine, ... bioRxiv, 2024.10. 02.616266, 2024 | | 2024 |
| Demystifying Viruses: Understanding the Role of River Viruses on Microbial Community Structure and Biogeochemical Cycling Through a Multi-Omic Lens JR Ramos Colorado State University, 2023 | | 2023 |
| Putting microorganisms on the map: a continental scale context for microbial genomes sampled from North American watersheds M Borton, K Willi, A Oliverio, R Daly, T Bambakidis, M Shaffer, ... AGU Fall Meeting Abstracts 2022, B26C-06, 2022 | | 2022 |
| Novel Methanogenic Lineages Are Key Players in The Methane Cycle in a Coastal Freshwater Wetland DKDM Ferreira, AB Narrowe, M Borton, P Liu, J Villa, BB McGivern, ... AGU Fall Meeting 2021, 2021 | | 2021 |
| River Corridor Hydro-Biogeochemistry Across Scales From Headwaters to Coasts I Oral M Borton, AE Goldman, J Stegen, J Rodriguez-Ramos AGU Fall Meeting 2021, 2021 | | 2021 |
| Putting the BIO in hydroBIOgeochemistry: current knowledge and future directions of river microbiome science M Borton, A Pelly, K Willi, J Rodriguez-Ramos, A Goldman, K Wrighton, ... AGU Fall Meeting Abstracts 2021, H55O-0903, 2021 | | 2021 |
| A Deep, Diverse Reservoir of Methane-Cycling Microorganisms Resists Hydrologic Perturbation to Sustain Metabolic Activity in Freshwater Wetland Soils A Narrowe, M Borton, P Liu, J Villa, B McGivern, R Daly, ... AGU Fall Meeting Abstracts 2021, B33B-04, 2021 | | 2021 |
| Microscopic time travelers: A finely tuned, time-resolved analysis of viral and microbial communities in the Erpe river J Rodriguez-Ramos, M Borton, R Daly, BM Mueller, LA Schopflin, ... AGU Fall Meeting Abstracts 2021, B22A-04, 2021 | | 2021 |
| Putting microorganisms on the map: continental-scale context for thousands of newly sampled microbial genomes from North American watersheds K Wrighton, M Borton, K Willi, R Flynn, R Daly, T Bambakidis, A Oliverio, ... AGU Fall Meeting Abstracts 2021, B22A-09, 2021 | | 2021 |
Rebecca A. DalyScience Strategy & Operations Lead, Soil Health, SyngentaVerified email at syngenta.com
