| N-GlyDE: a two-stage N-linked glycosylation site prediction incorporating gapped dipeptides and pattern-based encoding T Pitti, CT Chen, HN Lin, WK Choong, WL Hsu, TY Sung Scientific reports 9 (1), 15975, 2019 | 72 | 2019 |
| HYPROSP II-A knowledge-based hybrid method for protein secondary structure prediction based on local prediction confidence HN Lin, JM Chang, KP Wu, TY Sung, WL Hsu Bioinformatics 21 (15), 3227-3233, 2005 | 69 | 2005 |
| Protein subcellular localization prediction of eukaryotes using a knowledge-based approach HN Lin, CT Chen, TY Sung, SY Ho, WL Hsu BMC bioinformatics 10, 1-13, 2009 | 56 | 2009 |
| Kart: a divide-and-conquer algorithm for NGS read alignment HN Lin, WL Hsu Bioinformatics 33 (15), 2281-2287, 2017 | 51 | 2017 |
| GSAlign: an efficient sequence alignment tool for intra-species genomes HN Lin, WL Hsu BMC genomics 21, 1-10, 2020 | 49 | 2020 |
| HYPROSP: a hybrid protein secondary structure prediction algorithm—a knowledge-based approach KP Wu, HN Lin, JM Chang, TY Sung, WL Hsu Nucleic Acids Research 32 (17), 5059-5065, 2004 | 36 | 2004 |
| Improving protein secondary structure prediction based on short subsequences with local structure similarity HN Lin, TY Sung, SY Ho, WL Hsu Bmc Genomics 11, 1-14, 2010 | 35 | 2010 |
| GANA—a genetic algorithm for NMR backbone resonance assignment HN Lin, KP Wu, JM Chang, TY Sung, WL Hsu Nucleic acids research 33 (14), 4593-4601, 2005 | 29 | 2005 |
| DART: a fast and accurate RNA-seq mapper with a partitioning strategy HN Lin, WL Hsu Bioinformatics 34 (2), 190-197, 2018 | 25 | 2018 |
| MAGIC-web: a platform for untargeted and targeted N-linked glycoprotein identification TM Lih, WK Choong, CC Chen, CW Cheng, HN Lin, CT Chen, HY Chang, ... Nucleic acids research 44 (W1), W575-W580, 2016 | 15 | 2016 |
| A new similarity measure among protein sequences KP Wu, HN Lin, TY Sung, WL Hsu Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE …, 2003 | 13 | 2003 |
| HYPLOSP: a knowledge-based approach to protein local structure prediction CT Chen, HN Lin, TY Sung, WL Hsu Journal of Bioinformatics and Computational Biology 4 (06), 1287-1307, 2006 | 8 | 2006 |
| Improving the alignment quality of consistency based aligners with an evaluation function using synonymous protein words HN Lin, C Notredame, JM Chang, TY Sung, WL Hsu PLoS One 6 (12), e27872, 2011 | 7 | 2011 |
| MapCaller–An integrated and efficient tool for short-read mapping and variant calling using high-throughput sequenced data HN Lin, WL Hsu BioRxiv, 783605, 2019 | 6 | 2019 |
| UniLoc: a universal protein localization site predictor for eukaryotes and prokaryotes HN Lin, CT Chen, TY Sung, WL Hsu bioRxiv, 252916, 2018 | 2 | 2018 |
| A Two-stage Classifier for Protein β-turn Prediction Using Support Vector Machines HS Chiu, HN Lin, A Lo, TY Sung IEEE International Conference on Granular Computing, 2006 | 2 | 2006 |
| StrainPro–a highly accurate Metagenomic strain-level profiling tool HN Lin, YL Lin, WL Hsu bioRxiv, 807149, 2019 | 1 | 2019 |
| A Two-stage Classifier for Protein B-turn Prediction Using Support Vector Machines HS Chiu, HN Lin, A Lo, TY Sung, WL Hsu 2006 IEEE International Conference on Granular Computing, 738-743, 2006 | 1 | 2006 |
| A Knowledge-based Approach to Protein Local Structure Prediction CT Chen, HN Lin, KUNPIN WU, TY Sung, WL Hsu Proceedings Of The 4th Asia-Pacific Bioinformatics Conference, 257-266, 2006 | 1 | 2006 |
| Divide-and-conquer global alignment algorithm for finding highly similar candidates of a sequence in database WL Hsu, HN Lin US Patent App. 15/694,365, 2018 | | 2018 |
