Cancer's second genome: microbial cancer diagnostics and redefining clonal evolution as a multispecies process: humans and their tumors are not aseptic, and the multispecies … GD Sepich‐Poore, C Guccione, L Laplane, T Pradeu, K Curtius, R Knight BioEssays 44 (5), 2100252, 2022 | 14 | 2022 |
All-FIT: allele-frequency-based imputation of tumor purity from high-depth sequencing data JW Loh, C Guccione, F Di Clemente, G Riedlinger, S Ganesan, ... Bioinformatics 36 (7), 2173-2180, 2020 | 13 | 2020 |
AI-assisted discovery of an ethnicity-influenced driver of cell transformation in esophageal and gastroesophageal junction adenocarcinomas P Ghosh, VJ Campos, DT Vo, C Guccione, V Goheen-Holland, C Tindle, ... JCI insight 7 (18), 2022 | 6 | 2022 |
Circular extrachromosomal DNA promotes tumor heterogeneity in high-risk medulloblastoma OS Chapman, J Luebeck, S Sridhar, ITL Wong, D Dixit, S Wang, G Prasad, ... Nature genetics 55 (12), 2189-2199, 2023 | 5 | 2023 |
Challenges in determining the role of microbiome evolution in Barrett’s esophagus and progression to esophageal adenocarcinoma C Guccione, R Yadlapati, S Shah, R Knight, K Curtius Microorganisms 9 (10), 2003, 2021 | 5 | 2021 |
Oral microbiome diversity between patients with normal versus elevated salivary pepsin levels and its implication in gastroesophageal reflux disease SD Ma, C Guccione, K Linnemeyer, PA Weissbrod, K Curtius, ... Foregut 3 (1), 131-134, 2023 | 4 | 2023 |
BIRDMAn: A Bayesian differential abundance framework that enables robust inference of host-microbe associations G Rahman, JT Morton, C Martino, GD Sepich-Poore, C Allaband, ... bioRxiv, 2023 | 4 | 2023 |
You are what you excrete C Guccione, D McDonald, R Fielding-Miller, K Curtius, R Knight Nature Microbiology 8 (6), 1002-1003, 2023 | 3 | 2023 |
Robustness of cancer microbiome signals over a broad range of methodological variation GD Sepich-Poore, D McDonald, E Kopylova, C Guccione, Q Zhu, G Austin, ... Oncogene, 1-22, 2024 | 2 | 2024 |
Improving microbial detection in cancer tissue samples with computational host depletion using the pangenome C Guccione, L Patel, D McDonald, C Martino, A González, ... Cancer Research 84 (6_Supplement), 4954-4954, 2024 | | 2024 |
Correction: Robustness of cancer microbiome signals over a broad range of methodological variation GD Sepich-Poore, D McDonald, E Kopylova, C Guccione, Q Zhu, G Austin, ... Oncogene 43 (20), 1579, 2024 | | 2024 |
Predicting locus phylogenetic utility using machine learning A Knyshov, AG Walling, C Guccione, R Schwartz bioRxiv, 2024.05. 06.592828, 2024 | | 2024 |
Elucidating tumor evolutionary patterns using high-depth molecular data C Guccione, H Khiabanian | | |