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Caitlin Guccione
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Cancer's second genome: microbial cancer diagnostics and redefining clonal evolution as a multispecies process: humans and their tumors are not aseptic, and the multispecies …
GD Sepich‐Poore, C Guccione, L Laplane, T Pradeu, K Curtius, R Knight
BioEssays 44 (5), 2100252, 2022
142022
All-FIT: allele-frequency-based imputation of tumor purity from high-depth sequencing data
JW Loh, C Guccione, F Di Clemente, G Riedlinger, S Ganesan, ...
Bioinformatics 36 (7), 2173-2180, 2020
132020
AI-assisted discovery of an ethnicity-influenced driver of cell transformation in esophageal and gastroesophageal junction adenocarcinomas
P Ghosh, VJ Campos, DT Vo, C Guccione, V Goheen-Holland, C Tindle, ...
JCI insight 7 (18), 2022
62022
Circular extrachromosomal DNA promotes tumor heterogeneity in high-risk medulloblastoma
OS Chapman, J Luebeck, S Sridhar, ITL Wong, D Dixit, S Wang, G Prasad, ...
Nature genetics 55 (12), 2189-2199, 2023
52023
Challenges in determining the role of microbiome evolution in Barrett’s esophagus and progression to esophageal adenocarcinoma
C Guccione, R Yadlapati, S Shah, R Knight, K Curtius
Microorganisms 9 (10), 2003, 2021
52021
Oral microbiome diversity between patients with normal versus elevated salivary pepsin levels and its implication in gastroesophageal reflux disease
SD Ma, C Guccione, K Linnemeyer, PA Weissbrod, K Curtius, ...
Foregut 3 (1), 131-134, 2023
42023
BIRDMAn: A Bayesian differential abundance framework that enables robust inference of host-microbe associations
G Rahman, JT Morton, C Martino, GD Sepich-Poore, C Allaband, ...
bioRxiv, 2023
42023
You are what you excrete
C Guccione, D McDonald, R Fielding-Miller, K Curtius, R Knight
Nature Microbiology 8 (6), 1002-1003, 2023
32023
Robustness of cancer microbiome signals over a broad range of methodological variation
GD Sepich-Poore, D McDonald, E Kopylova, C Guccione, Q Zhu, G Austin, ...
Oncogene, 1-22, 2024
22024
Improving microbial detection in cancer tissue samples with computational host depletion using the pangenome
C Guccione, L Patel, D McDonald, C Martino, A González, ...
Cancer Research 84 (6_Supplement), 4954-4954, 2024
2024
Correction: Robustness of cancer microbiome signals over a broad range of methodological variation
GD Sepich-Poore, D McDonald, E Kopylova, C Guccione, Q Zhu, G Austin, ...
Oncogene 43 (20), 1579, 2024
2024
Predicting locus phylogenetic utility using machine learning
A Knyshov, AG Walling, C Guccione, R Schwartz
bioRxiv, 2024.05. 06.592828, 2024
2024
Elucidating tumor evolutionary patterns using high-depth molecular data
C Guccione, H Khiabanian
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Articles 1–13