| Transcriptional profiling and therapeutic targeting of oxidative stress in neuroinflammation AS Mendiola, JK Ryu, S Bardehle, A Meyer-Franke, KKH Ang, C Wilson, ... Nature immunology 21 (5), 513-524, 2020 | 145 | 2020 |
| Features that define the best ChIP-seq peak calling algorithms R Thomas, S Thomas, AK Holloway, KS Pollard Briefings in bioinformatics 18 (3), 441-450, 2017 | 142 | 2017 |
| Global gene expression profiling of a population exposed to a range of benzene levels CM McHale, L Zhang, Q Lan, R Vermeulen, G Li, AE Hubbard, KE Porter, ... Environmental health perspectives 119 (5), 628-640, 2011 | 121 | 2011 |
| Genetic and environmental pathways to complex diseases JM Gohlke, R Thomas, Y Zhang, MC Rosenstein, AP Davis, C Murphy, ... BMC Systems Biology 3, 1-15, 2009 | 101 | 2009 |
| Microglial Gi-dependent dynamics regulate brain network hyperexcitability M Merlini, VA Rafalski, K Ma, KY Kim, EA Bushong, PE Rios Coronado, ... Nature neuroscience 24 (1), 19-23, 2021 | 100 | 2021 |
| Context-specific transcription factor functions regulate epigenomic and transcriptional dynamics during cardiac reprogramming NR Stone, CA Gifford, R Thomas, KJB Pratt, K Samse-Knapp, ... Cell stem cell 25 (1), 87-102. e9, 2019 | 98 | 2019 |
| The Next Generation of Risk Assessment multi-year study—highlights of findings, applications to risk assessment, and future directions I Cote, ME Andersen, GT Ankley, S Barone, LS Birnbaum, K Boekelheide, ... Environmental health perspectives 124 (11), 1671-1682, 2016 | 94 | 2016 |
| Phosphorylation of tau at Y18, but not tau-fyn binding, is required for tau to modulate NMDA receptor-dependent excitotoxicity in primary neuronal culture T Miyamoto, L Stein, R Thomas, B Djukic, P Taneja, J Knox, K Vossel, ... Molecular neurodegeneration 12, 1-19, 2017 | 91 | 2017 |
| Answer ALS, a large-scale resource for sporadic and familial ALS combining clinical and multi-omics data from induced pluripotent cell lines EG Baxi, T Thompson, J Li, JA Kaye, RG Lim, J Wu, D Ramamoorthy, ... Nature neuroscience 25 (2), 226-237, 2022 | 82 | 2022 |
| Estimating the global public health implications of electricity and coal consumption JM Gohlke, R Thomas, A Woodward, D Campbell-Lendrum, ... Environmental health perspectives 119 (6), 821-826, 2011 | 82 | 2011 |
| Inhaled formaldehyde induces DNA–protein crosslinks and oxidative stress in bone marrow and other distant organs of exposed mice X Ye, Z Ji, C Wei, CM McHale, S Ding, R Thomas, X Yang, L Zhang Environmental and molecular mutagenesis 54 (9), 705-718, 2013 | 75 | 2013 |
| A chromatin accessibility atlas of the developing human telencephalon E Markenscoff-Papadimitriou, S Whalen, P Przytycki, R Thomas, ... Cell 182 (3), 754-769. e18, 2020 | 73 | 2020 |
| Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir J Neidleman, X Luo, J Frouard, G Xie, F Hsiao, T Ma, V Morcilla, A Lee, ... Elife 9, e60933, 2020 | 70 | 2020 |
| Modeling human TBX5 haploinsufficiency predicts regulatory networks for congenital heart disease IS Kathiriya, KS Rao, G Iacono, WP Devine, AP Blair, SK Hota, MH Lai, ... Developmental cell 56 (3), 292-309. e9, 2021 | 69 | 2021 |
| Genome-wide functional profiling reveals genes required for tolerance to benzene metabolites in yeast M North, VJ Tandon, R Thomas, A Loguinov, I Gerlovina, AE Hubbard, ... PloS one 6 (8), e24205, 2011 | 65 | 2011 |
| A model-based optimization framework for the inference on gene regulatory networks from DNA array data R Thomas, S Mehrotra, ET Papoutsakis, V Hatzimanikatis Bioinformatics 20 (17), 3221-3235, 2004 | 62 | 2004 |
| Low-dose metabolism of benzene in humans: science and obfuscation SM Rappaport, S Kim, R Thomas, BA Johnson, FY Bois, LL Kupper Carcinogenesis 34 (1), 2-9, 2013 | 49 | 2013 |
| Analysis of the transcriptome in molecular epidemiology studies CM McHale, L Zhang, R Thomas, MT Smith Environmental and molecular mutagenesis 54 (7), 500-517, 2013 | 48 | 2013 |
| Long COVID manifests with T cell dysregulation, inflammation and an uncoordinated adaptive immune response to SARS-CoV-2 K Yin, MJ Peluso, X Luo, R Thomas, MG Shin, J Neidleman, A Andrew, ... Nature Immunology, 1-8, 2024 | 47 | 2024 |
| Dynamic BAF chromatin remodeling complex subunit inclusion promotes temporally distinct gene expression programs in cardiogenesis SK Hota, JR Johnson, E Verschueren, R Thomas, AM Blotnick, Y Zhu, ... Development 146 (19), dev174086, 2019 | 46 | 2019 |
