| Integrating longitudinal clinical and microbiome data to predict growth faltering in preterm infants J Lugo-Martinez, S Xu, J Levesque, D Gallagher, LA Parker, J Neu, ... Journal of Biomedical Informatics 128, 104031, 2022 | 5 | 2022 |
| InsuLock: A weakly supervised learning approach for accurate insulator prediction, and variant impact quantification SS Srinivasan, Y Gong, S Xu, A Hwang, M Xu, MJ Girgenti, J Zhang Genes 13 (4), 621, 2022 | 2 | 2022 |
| Translator: A Transfer Learning Approach to Facilitate Single-Cell ATAC-Seq Data Analysis from Reference Dataset S Xu, M Skarica, A Hwang, Y Dai, C Lee, MJ Girgenti, J Zhang Journal of Computational Biology 29 (7), 619-633, 2022 | 1 | 2022 |
| scENCORE: leveraging single-cell epigenetic data to predict chromatin conformation using graph embedding Z Duan, S Xu, S Sai Srinivasan, A Hwang, CY Lee, F Yue, M Gerstein, ... Briefings in Bioinformatics 25 (2), bbae096, 2024 | | 2024 |
| ScISOr-ATAC reveals convergent and divergent splicing and chromatin specificities between matched cell types across cortical regions, evolution, and in Alzheimer's disease. W Hu, C Foord, J Hsu, L Fan, MJ Corley, TN Bhatia, S Xu, N Belchikov, ... bioRxiv, 2024.02. 24.581897, 2024 | | 2024 |
