| Multiplexed droplet single-cell RNA-sequencing using natural genetic variation HM Kang, M Subramaniam, S Targ, M Nguyen, L Maliskova, E McCarthy, ... Nature biotechnology 36 (1), 89-94, 2018 | 806 | 2018 |
| CRISPR-mediated activation of a promoter or enhancer rescues obesity caused by haploinsufficiency N Matharu, S Rattanasopha, S Tamura, L Maliskova, Y Wang, A Bernard, ... Science 363 (6424), eaau0629, 2019 | 273 | 2019 |
| Live-cell imaging reveals enhancer-dependent Sox2 transcription in the absence of enhancer proximity JM Alexander, J Guan, B Li, L Maliskova, M Song, Y Shen, B Huang, ... elife 8, e41769, 2019 | 258 | 2019 |
| Single-cell RNA-seq reveals cell type–specific molecular and genetic associations to lupus RK Perez, MG Gordon, M Subramaniam, MC Kim, GC Hartoularos, S Targ, ... Science 376 (6589), eabf1970, 2022 | 192 | 2022 |
| Mapping cis-regulatory chromatin contacts in neural cells links neuropsychiatric disorder risk variants to target genes M Song, X Yang, X Ren, L Maliskova, B Li, IR Jones, C Wang, F Jacob, ... Nature genetics 51 (8), 1252-1262, 2019 | 164 | 2019 |
| A new class of temporarily phenotypic enhancers identified by CRISPR/Cas9-mediated genetic screening Y Diao, B Li, Z Meng, I Jung, AY Lee, J Dixon, L Maliskova, K Guan, ... Genome research 26 (3), 397-405, 2016 | 144 | 2016 |
| Cell-type-specific 3D epigenomes in the developing human cortex M Song, MP Pebworth, X Yang, A Abnousi, C Fan, J Wen, JD Rosen, ... Nature 587 (7835), 644-649, 2020 | 118 | 2020 |
| SOX2 regulates acinar cell development in the salivary gland E Emmerson, AJ May, S Nathan, N Cruz-Pacheco, CO Lizama, ... Elife 6, e26620, 2017 | 105 | 2017 |
| Transcriptomic analysis of immune cells in a multi-ethnic cohort of systemic lupus erythematosus patients identifies ethnicity-and disease-specific expression signatures G Andreoletti, CM Lanata, L Trupin, I Paranjpe, TS Jain, J Nititham, ... Communications biology 4 (1), 488, 2021 | 31 | 2021 |
| Parallel characterization of cis-regulatory elements for multiple genes using CRISPRpath X Ren, M Wang, B Li, K Jamieson, L Zheng, IR Jones, B Li, MA Takagi, ... Science advances 7 (38), eabi4360, 2021 | 19 | 2021 |
| Multi-omic longitudinal study reveals immune correlates of clinical course among hospitalized COVID-19 patients J Diray-Arce, S Fourati, ND Jayavelu, R Patel, C Maguire, AC Chang, ... Cell Reports Medicine 4 (6), 2023 | 12 | 2023 |
| SMART-Q: An integrative pipeline quantifying cell type-specific RNA transcription X Yang, S Bergenholtz, L Maliskova, MP Pebworth, AR Kriegstein, Y Li, ... PLoS One 15 (4), e0228760, 2020 | 6 | 2020 |
| A myeloid program associated with COVID-19 severity is decreased by therapeutic blockade of IL-6 signaling JA Hackney, H Shivram, J Vander Heiden, C Overall, L Orozco, X Gao, ... Iscience 26 (10), 2023 | 1 | 2023 |
| Patients with abdominal aortic aneurysms have reduced levels of microRNA 122-5p in circulating exosomes JL Lopez, JL Ramirez, TA Phu, P Duong, L Bouchareychas, CR Kuhrau, ... Plos one 18 (2), e0281371, 2023 | | 2023 |
| Cell-Specific Transposable Element Gene Expression Analysis Identifies Associations with Systemic Lupus Erythematosus Phenotypes Z Cutts, S Patterson, L Maliskova, KE Taylor, CJ Ye, M Dall'Era, ... bioRxiv, 2023.11. 27.567477, 2023 | | 2023 |
| 606 Cell-specific human endogenous retrovirus expression, host gene expression and SLE phenotypes Z Cutts, S Patterson, L Maliskova, CJ Ye, M Dall’Era, J Yazdany, ... Lupus Science & Medicine 9 (Suppl 3), 2022 | | 2022 |
| Integrative Analysis of Cell-Specific Human Endogenous Retrovirus Expression and Host Gene Expression Identifies Associations with Clinical SLE Phenotypes Z Cutts, S Patterson, L Maliskova, C Ye, M Dall'Era, J Yazdany, L Criswell, ... ARTHRITIS & RHEUMATOLOGY 74, 1310-1313, 2022 | | 2022 |
| Physical Inactivity Is Associated with Increased Expression of T Cell Inflammatory Genes in Systemic Lupus S Patterson, SC Gonzalez, A Tsitsiklis, C Lanata, L Maliskova, C Ye, ... ARTHRITIS & RHEUMATOLOGY 74, 4421-4423, 2022 | | 2022 |
| Instructional tutorial for using demuxlet HM Kang, M Subramaniam, S Targ, M Nguyen, L Maliskova, E McCarthy, ... | | 2019 |
| cis-Regulatory Chromatin Contacts in Neural Cells Reveal Contributions of Genetic Variants to Complex Neurological Disorders M Song, X Yang, X Ren, L Maliskova, B Li, I Jones, C Wang, F Jacob, ... bioRxiv, 494450, 2018 | | 2018 |
