| Functional links between clustered microRNAs: suppression of cell-cycle inhibitors by microRNA clusters in gastric cancer YK Kim, J Yu, TS Han, SY Park, B Namkoong, DH Kim, K Hur, MW Yoo, ... Nucleic acids research 37 (5), 1672-1681, 2009 | 522 | 2009 |
| Network context and selection in the evolution to enzyme specificity H Nam, NE Lewis, JA Lerman, DH Lee, RL Chang, D Kim, BO Palsson Science 337 (6098), 1101-1104, 2012 | 243 | 2012 |
| Deciphering Fur transcriptional regulatory network highlights its complex role beyond iron metabolism in Escherichia coli SW Seo, D Kim, H Latif, EJ O’Brien, R Szubin, BO Palsson Nature Communications 5, 2014 | 170 | 2014 |
| Multi-omic data integration enables discovery of hidden biological regularities A Ebrahim, E Brunk, J Tan, EJ O'brien, D Kim, R Szubin, JA Lerman, ... Nature communications 7 (1), 1-9, 2016 | 110 | 2016 |
| Comparative analysis of regulatory elements between Escherichia coli and Klebsiella pneumoniae by genome-wide transcription start site profiling D Kim, JSJ Hong, Y Qiu, H Nagarajan, JH Seo, BK Cho, SF Tsai, ... PLoS Genet 8 (8), e1002867, 2012 | 109 | 2012 |
| Structural systems biology evaluation of metabolic thermotolerance in Escherichia coli RL Chang, K Andrews, D Kim, Z Li, A Godzik, BO Palsson Science 340 (6137), 1220-1223, 2013 | 107 | 2013 |
| Genome-wide Reconstruction of OxyR and SoxRS Transcriptional Regulatory Networks under Oxidative Stress in Escherichia coli K-12 MG1655 SW Seo, D Kim, R Szubin, BO Palsson Cell Reports 12 (8), 1289-1299, 2015 | 96 | 2015 |
| Genome-scale reconstruction of the sigma factor network in Escherichia coli: topology and functional states BK Cho, D Kim, EM Knight, K Zengler, BO Palsson BMC biology 12 (1), 1, 2014 | 92 | 2014 |
| The PurR regulon in Escherichia coli K-12 MG1655 BK Cho, SA Federowicz, M Embree, YS Park, D Kim, BØ Palsson Nucleic acids research 39 (15), 6456-6464, 2011 | 89 | 2011 |
| Global transcriptional regulatory network for Escherichia coli robustly connects gene expression to transcription factor activities X Fang, A Sastry, N Mih, D Kim, J Tan, JT Yurkovich, CJ Lloyd, Y Gao, ... Proceedings of the National Academy of Sciences 114 (38), 10286-10291, 2017 | 51 | 2017 |
| Decoding genome-wide GadEWX-transcriptional regulatory networks reveals multifaceted cellular responses to acid stress in Escherichia coli SW Seo, D Kim, EJ O’Brien, R Szubin, BO Palsson Nature communications 6 (1), 1-8, 2015 | 51 | 2015 |
| Determining the control circuitry of redox metabolism at the genome-scale S Federowicz, D Kim, A Ebrahim, J Lerman, H Nagarajan, B Cho, ... PLoS Genet 10 (4), e1004264, 2014 | 49 | 2014 |
| Systematic metabolic engineering of Methylomicrobium alcaliphilum 20Z for 2, 3-butanediol production from methane AD Nguyen, IY Hwang, OK Lee, D Kim, MG Kalyuzhnaya, R Mariyana, ... Metabolic engineering 47, 323-333, 2018 | 40 | 2018 |
| Systems biology definition of the core proteome of metabolism and expression is consistent with high-throughput data L Yang, J Tan, EJ O’Brien, JM Monk, D Kim, HJ Li, P Charusanti, ... Proceedings of the National Academy of Sciences 112 (34), 10810-10815, 2015 | 35 | 2015 |
| The Escherichia coli transcriptome mostly consists of independently regulated modules AV Sastry, Y Gao, R Szubin, Y Hefner, S Xu, D Kim, KS Choudhary, ... Nature communications 10 (1), 1-14, 2019 | 34 | 2019 |
| Systematic discovery of uncharacterized transcription factors in Escherichia coli K-12 MG1655 Y Gao, JT Yurkovich, SW Seo, I Kabimoldayev, A Dräger, K Chen, ... Nucleic acids research 46 (20), 10682-10696, 2018 | 31 | 2018 |
| Multiple-omic data analysis of Klebsiella pneumoniae MGH 78578 reveals its transcriptional architecture and regulatory features JH Seo, JSJ Hong, D Kim, BK Cho, TW Huang, SF Tsai, BO Palsson, ... BMC genomics 13 (1), 679, 2012 | 30 | 2012 |
| Systems assessment of transcriptional regulation on central carbon metabolism by Cra and CRP D Kim, SW Seo, Y Gao, H Nam, GI Guzman, BK Cho, BO Palsson Nucleic acids research 46 (6), 2901-2917, 2018 | 25 | 2018 |
| Coordination-Driven Self-Assembly Using Ditopic Pyridyl–Pyrazolyl Donor and p-Cymene Ru(II) Acceptors: [2]Catenane Synthesis and Anticancer Activities JH Jo, N Singh, D Kim, SM Cho, A Mishra, H Kim, SC Kang, KW Chi Inorganic Chemistry 56 (14), 8430-8438, 2017 | 22 | 2017 |
| Revealing genome-scale transcriptional regulatory landscape of OmpR highlights its expanded regulatory roles under osmotic stress in Escherichia coli K-12 MG1655 SW Seo, Y Gao, D Kim, R Szubin, J Yang, BK Cho, BO Palsson Scientific reports 7 (1), 1-10, 2017 | 18 | 2017 |
Bernhard PalssonUCSDVerified email at eng.ucsd.edu
