| Single-cell dissection of intratumoral heterogeneity and lineage diversity in metastatic gastric adenocarcinoma R Wang, M Dang, K Harada, G Han, F Wang, M Pool Pizzi, M Zhao, ... Nature medicine 27 (1), 141-151, 2021 | 158 | 2021 |
| Pan-cancer T cell atlas links a cellular stress response state to immunotherapy resistance Y Chu, E Dai, Y Li, G Han, G Pei, DR Ingram, K Thakkar, JJ Qin, M Dang, ... Nature medicine 29 (6), 1550-1562, 2023 | 69 | 2023 |
| Androgen receptor blockade promotes response to BRAF/MEK-targeted therapy CP Vellano, MG White, MC Andrews, M Chelvanambi, RG Witt, ... Nature 606 (7915), 797-803, 2022 | 61 | 2022 |
| Distinct molecular and immune hallmarks of inflammatory arthritis induced by immune checkpoint inhibitors for cancer therapy ST Kim, Y Chu, M Misoi, ME Suarez-Almazor, JH Tayar, H Lu, M Buni, ... Nature communications 13 (1), 1970, 2022 | 45 | 2022 |
| The single-cell immunogenomic landscape of B and plasma cells in early-stage lung adenocarcinoma D Hao, G Han, A Sinjab, LI Gomez-Bolanos, R Lazcano, A Serrano, ... Cancer discovery 12 (11), 2626-2645, 2022 | 41 | 2022 |
| DeepDNA: A hybrid convolutional and recurrent neural network for compressing human mitochondrial genomes R Wang, Y Bai, YS Chu, Z Wang, Y Wang, M Sun, J Li, T Zang, Y Wang 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2018 | 17 | 2018 |
| Evolution of immune and stromal cell states and ecotypes during gastric adenocarcinoma progression R Wang, S Song, J Qin, K Yoshimura, F Peng, Y Chu, Y Li, Y Fan, J Jin, ... Cancer cell 41 (8), 1407-1426. e9, 2023 | 14 | 2023 |
| FNSemSim: an improved disease similarity method based on network fusion Y Wang, L Juan, Y Chu, R Wang, T Zang, Y Wang 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2017 | 13 | 2017 |
| WDNfinder: a method for minimum driver node set detection and analysis in directed and weighted biological network Y Chu, Z Wang, R Wang, N Zhang, J Li, Y Hu, M Teng, Y Wang Journal of bioinformatics and computational biology 15 (05), 1750021, 2017 | 10 | 2017 |
| Single cell clonotypic and transcriptional evolution of multiple myeloma precursor disease M Dang, R Wang, HC Lee, KK Patel, MR Becnel, G Han, SK Thomas, ... Cancer cell 41 (6), 1032-1047. e4, 2023 | 7 | 2023 |
| Using semantic association to extend and infer literature-oriented relativity between terms L Cheng, J Li, Y Hu, Y Jiang, Y Liu, Y Chu, Z Wang, Y Wang IEEE/ACM Transactions on Computational Biology and Bioinformatics 12 (6 …, 2015 | 6 | 2015 |
| Pysubsim-tree: A package for simulating tumor genomes according to tumor evolution history Y Chu, L Wang, R Wang, M Teng, Y Wang 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2017 | 5 | 2017 |
| Modeling and correct the GC bias of tumor and normal WGS data for SCNA based tumor subclonal population inferring Y Chu, M Teng, Y Wang BMC bioinformatics 19, 79-87, 2018 | 3 | 2018 |
| Pre-scnaclonal: Efficient gc bias correction for scna based tumor subclonal populations inferring Y Chu, M Teng, Z Wang, Y Wang, Y Wang 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2017 | 3 | 2017 |
| A pipeline for reconstructing somatic copy number alternation’s subclonal population-based next-generation sequencing data Y Chu, C Nie, Y Wang Frontiers in genetics 10, 491901, 2020 | 2 | 2020 |
| Simulating genetically heterozygous genomes in the tumour tissue according to its clonal evolution history Y Chu, M Teng, Y Wang International Journal of Computational Biology and Drug Design 12 (2), 143-152, 2019 | 2 | 2019 |
| p-SCNAClonal: Somatic copy number alterations based tumor subclonal population inferring method Y Chu, C Nie, Y Wang 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2018 | 2 | 2018 |
| SVM-based prediction of protein-protein interactions of glucosinolate biosynthesis YS Chu, YQ Liu, Q Wu 2012 International Conference on Machine Learning and Cybernetics 2, 471-476, 2012 | 2 | 2012 |
| iStarTLS: Advanced detection and phenotyping of tertiary lymphoid structures KS Cho, J Jiang, D Zhang, Y Liu, J Chen, RL Segura, X Yan, G Pei, ... Cancer Research 84 (6_Supplement), 7424-7424, 2024 | | 2024 |
| SpatialCS: A tool to effectively integrate histological annotations and spatial transcriptomics analysis Y Chu, KS Cho, I Khanduri, T Zhou, J Jiang, Y Liu, X Yan, G Pei, Y Dai, ... Cancer Research 84 (6_Supplement), 7417-7417, 2024 | | 2024 |
