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Junil Kim
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Reverse engineering of gene regulatory networks
KH Cho, SM Choo, SH Jung, JR Kim, HS Choi, J Kim
IET Systems Biology 1 (3), 149-163, 2007
1492007
Discovery of a kernel for controlling biomolecular regulatory networks
J Kim, SM Park, KH Cho
Scientific reports 3 (1), 1-9, 2013
972013
KIAA1324 Suppresses Gastric Cancer Progression by Inhibiting the Oncoprotein GRP78KIAA1324, a Novel Gastric Tumor Suppressor
JM Kang, S Park, SJ Kim, H Kim, B Lee, J Kim, J Park, ST Kim, HK Yang, ...
Cancer research 75 (15), 3087-3097, 2015
642015
Inferring gene regulatory networks from temporal expression profiles under time-delay and noise
S Kim, J Kim, KH Cho
Computational biology and chemistry 31 (4), 239-245, 2007
612007
Reduction of complex signaling networks to a representative kernel
JR Kim, J Kim, YK Kwon, HY Lee, P Heslop-Harrison, KH Cho
Science signaling 4 (175), ra35-ra35, 2011
562011
Dipeptide species regulate p38MAPK–Smad3 signalling to maintain chronic myelogenous leukaemia stem cells
K Naka, Y Jomen, K Ishihara, J Kim, T Ishimoto, EJ Bae, RP Mohney, ...
Nature communications 6 (1), 1-14, 2015
462015
Co-chaperone BAG2 determines the pro-oncogenic role of cathepsin B in triple-negative breast cancer cells
KM Yang, E Bae, SG Ahn, K Pang, Y Park, J Park, J Lee, A Ooshima, ...
Cell reports 21 (10), 2952-2964, 2017
362017
Oral supplementation with cocoa extract reduces UVB-induced wrinkles in hairless mouse skin
JE Kim, D Song, J Kim, J Choi, JR Kim, HS Yoon, JS Bae, M Han, S Lee, ...
Journal of Investigative Dermatology 136 (5), 1012-1021, 2016
342016
A critical role for estrogen-related receptor signaling in cardiac maturation
T Sakamoto, TR Matsuura, S Wan, DM Ryba, J Kim, KJ Won, L Lai, ...
Circulation research 126 (12), 1685-1702, 2020
302020
SHARP: hyperfast and accurate processing of single-cell RNA-seq data via ensemble random projection
S Wan, J Kim, KJ Won
Genome research 30 (2), 205-213, 2020
302020
Robustness and evolvability of the human signaling network
J Kim, D Vandamme, JR Kim, AG Munoz, W Kolch, KH Cho
PLoS computational biology 10 (7), e1003763, 2014
302014
A systems-biological study on the identification of safe and effective molecular targets for the reduction of ultraviolet B-induced skin pigmentation
HS Lee, MJ Goh, J Kim, TJ Choi, H Kwang Lee, Y Joo Na, KH Cho
Scientific reports 5 (1), 1-11, 2015
272015
The co-regulation mechanism of transcription factors in the human gene regulatory network
J Kim, M Choi, JR Kim, H Jin, VN Kim, KH Cho
Nucleic acids research 40 (18), 8849-8861, 2012
242012
Evolutionary design principles and functional characteristics based on kingdom-specific network motifs
TH Kim, J Kim, P Heslop-Harrison, KH Cho
Bioinformatics 27 (2), 245-251, 2011
242011
The metabolic response to a high-fat diet reveals obesity-prone and-resistant phenotypes in mice with distinct mRNA-seq transcriptome profiles
JY Choi, RA McGregor, EY Kwon, YJ Kim, Y Han, JHY Park, KW Lee, ...
International Journal of Obesity 40 (9), 1452-1460, 2016
222016
Evolutionary design principles of modules that control cellular differentiation: consequences for hysteresis and multistationarity
J Kim, TG Kim, SH Jung, JR Kim, T Park, P Heslop-Harrison, KH Cho
Bioinformatics 24 (13), 1516-1522, 2008
182008
Homozygous deletions at 3p22, 5p14, 6q15, and 9p21 result in aberrant expression of tumor suppressor genes in gastric cancer
B Lee, K Yoon, S Lee, JM Kang, J Kim, SH Shim, HM Kim, S Song, ...
Genes, Chromosomes and Cancer 54 (3), 142-155, 2015
172015
A system-level investigation into the cellular toxic response mechanism mediated by AhR signal transduction pathway
J Gim, HS Kim, J Kim, M Choi, JR Kim, YJ Chung, KH Cho
Bioinformatics 26 (17), 2169-2175, 2010
132010
TENET: gene network reconstruction using transfer entropy reveals key regulatory factors from single cell transcriptomic data
J Kim, S T. Jakobsen, KN Natarajan, KJ Won
Nucleic acids research 49 (1), e1-e1, 2021
122021
CellBIC: bimodality-based top-down clustering of single-cell RNA sequencing data reveals hierarchical structure of the cell type
J Kim, DE Stanescu, KJ Won
Nucleic acids research 46 (21), e124-e124, 2018
112018
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Articles 1–20