| Performance evaluation and online realization of data-driven normalization methods used in LC/MS based untargeted metabolomics analysis B Li, J Tang, Q Yang, X Cui, S Li, S Chen, Q Cao, W Xue, N Chen, F Zhu Scientific reports 6 (1), 38881, 2016 | 148 | 2016 |
| MMEASE: online meta-analysis of metabolomic data by enhanced metabolite annotation, marker selection and enrichment analysis Q Yang, B Li, S Chen, J Tang, Y Li, Y Li, S Zhang, C Shi, Y Zhang, M Mou, ... Journal of Proteomics 232, 104023, 2021 | 85 | 2021 |
| Intestinal toxicity to CTLA-4 blockade driven by IL-6 and myeloid infiltration Y Zhou, YB Medik, B Patel, DB Zamler, S Chen, T Chapman, S Schneider, ... Journal of Experimental Medicine 220 (2), e20221333, 2022 | 26 | 2022 |
| hECA: The cell-centric assembly of a cell atlas S Chen, Y Luo, H Gao, F Li, Y Chen, J Li, R You, M Hao, H Bian, X Xi, ... iScience 25 (5), 2022 | 24 | 2022 |
| ITHscore: comprehensive quantification of intra-tumor heterogeneity in NSCLC by multi-scale radiomic features J Li, Z Qiu, C Zhang, S Chen, M Wang, Q Meng, H Lu, L Wei, H Lv, ... European Radiology 33 (2), 893-903, 2023 | 14 | 2023 |
| Cellular features of localized microenvironments in human meniscal degeneration: a single-cell transcriptomic study W Fu, S Chen, R Yang, C Li, H Gao, J Li, X Zhang eLife, 2022 | 10 | 2022 |
| A new statistic for efficient detection of repetitive sequences S Chen, Y Chen, F Sun, MS Waterman, X Zhang Bioinformatics 35 (22), 4596-4606, 2019 | 8 | 2019 |
| Toward a unified information framework for cell atlas assembly S Chen, Y Luo, H Gao, F Li, J Li, Y Chen, R You, H Lv, K Hua, R Jiang, ... National Science Review 9 (3), nwab179, 2022 | 7 | 2022 |
| An experiment on ab initio discovery of biological knowledge from scRNA-Seq data using machine learning N Shah, J Li, F Li, W Chen, H Gao, S Chen, K Hua, X Zhang Patterns 1 (5), 2020 | 6 | 2020 |
| Pixel-Level Clustering Reveals Intra-Tumor Heterogeneity in Non-Small Cell Lung Cancer J Li, H Lu, X Fang, S Chen, X Zhang 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2019 | 4 | 2019 |
| Using DenseFly algorithm for cell searching on massive scRNA-seq datasets Y Chen, S Chen, X Zhang BMC genomics 21, 1-9, 2020 | 3 | 2020 |
| Protocol for profiling cell-centric assembled single-cell human transcriptome data in hECA Y Chen, M Hao, H Gao, J Li, S Chen, F Li, L Wei, X Zhang STAR protocols 3 (3), 101589, 2022 | 2 | 2022 |
| Comprehensive simulation of metagenomic sequencing data with non‐uniform sampling distribution S Liu, K Hua, S Chen, X Zhang Quantitative Biology 6 (2), 175-185, 2018 | 2 | 2018 |
| Dynamic Regulation of Innate Lymphoid Cell Development During Ontogeny T Wu, S Chen, J Ma, X Zhu, M Luo, Y Wang, Y Tian, Q Sun, X Guo, ... bioRxiv, 2023.11. 01.565141, 2023 | 1 | 2023 |
| STEM: A Method for Mapping Single-cell and Spatial Transcriptomics Data with Transfer Learning M Hao, E Luo, Y Chen, Y Wu, C Li, S Chen, H Gao, H Bian, L Wei, ... bioRxiv, 2022.09. 23.509186, 2022 | 1 | 2022 |
| A human ensemble cell atlas (hECA) enables in data cell sorting S Chen, Y Luo, H Gao, F Li, J Li, Y Chen, R You, M Hao, H Bian, X Xi, ... bioRxiv, 2021.07. 21.453289, 2021 | 1 | 2021 |
| A General Framework for Representing and Annotating Multifaceted Cell Heterogeneity in Human Cell Atlas H Gao, K Hua, S Chen, Q Yin, R Jiang, X Zhang bioRxiv, 2021 | 1 | 2021 |
| Single-cell profiling highlight pathogenic myeloid features in house dust mite-induced murine model of airway inflammation LW Jiachen Liu, Jiaoyan Lv, Sijie Chen, Jie Ma, Jiaying Yao, Zan Yuan ... Allergy, 2024 | | 2024 |
| scMulan: a multitask generative pre-trained language model for single-cell analysis H Bian, Y Chen, X Dong, C Li, M Hao, S Chen, J Hu, M Sun, L Wei, ... International Conference on Research in Computational Molecular Biology, 479-482, 2024 | | 2024 |
| scDirect: key transcription factor identification for directing cell state transitions based on single-cell multi-omics data C Li, S Chen, Y Chen, H Bian, M Hao, L Wei, X Zhang bioRxiv, 2024.01. 08.574757, 2024 | | 2024 |
Xuegong ZhangTsinghua UniversityVerified email at tsinghua.edu.cn
