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Chengyu Deng
Chengyu Deng
Postdoc, UCSF
Verified email at ucsf.edu - Homepage
Title
Cited by
Cited by
Year
Three-dimensional genome rewiring in loci with human accelerated regions
KC Keough, S Whalen, F Inoue, PF Przytycki, T Fair, C Deng, M Steyert, ...
Science 380 (6643), eabm1696, 2023
332023
Massively parallel reporter perturbation assays uncover temporal regulatory architecture during neural differentiation
A Kreimer, T Ashuach, F Inoue, A Khodaverdian, C Deng, N Yosef, ...
Nature communications 13 (1), 1504, 2022
232022
Effects of culture condition on epigenomic profiles of brain tumor cells
MC Cox, C Deng, LB Naler, C Lu, SS Verbridge
ACS biomaterials science & engineering 5 (3), 1544-1552, 2019
192019
Transcription factor binding site orientation and order are major drivers of gene regulatory activity
I Georgakopoulos-Soares, C Deng, V Agarwal, CSY Chan, J Zhao, ...
Nature communications 14 (1), 2333, 2023
182023
Microfluidic epigenomic mapping technologies for precision medicine
C Deng, LB Naler, C Lu
Lab on a Chip 19 (16), 2630-2650, 2019
152019
Massively parallel characterization of psychiatric disorder-associated and cell-type-specific regulatory elements in the developing human cortex
C Deng, S Whalen, M Steyert, R Ziffra, PF Przytycki, F Inoue, DA Pereira, ...
bioRxiv, 2023
132023
Multiplexed and ultralow-input chip-seq enabled by tagmentation-based indexing and facile microfluidics
C Deng, TW Murphy, Q Zhang, LB Naler, A Xu, C Lu
Analytical chemistry 92 (20), 13661-13666, 2020
62020
Antipsychotic-induced epigenomic reorganization in frontal cortex of individuals with schizophrenia
B Zhu, RI Ainsworth, Z Wang, Z Liu, S Sierra, C Deng, LF Callado, ...
Elife 12, RP92393, 2024
42024
Massively parallel characterization of regulatory elements in the developing human cortex
C Deng, S Whalen, M Steyert, R Ziffra, PF Przytycki, F Inoue, DA Pereira, ...
Science 384 (6698), eadh0559, 2024
32024
Genetic regulation of cell-type specific chromatin accessibility shapes the etiology of brain diseases
B Zeng, J Bendl, C Deng, D Lee, R Misir, SM Reach, SP Kleopoulos, ...
BioRxiv, 2023
32023
nMOWChIP-seq: low-input genome-wide mapping of non-histone targets
Z Liu, LB Naler, Y Zhu, C Deng, Q Zhang, B Zhu, Z Zhou, M Sarma, ...
NAR Genomics and Bioinformatics 4 (2), lqac030, 2022
22022
Fusobacterium nucleatum infection modulates the transcriptome and epigenome of HCT116 colorectal cancer cells in an oxygen-dependent manner
B Udayasuryan, Z Zhou, RN Ahmad, P Sobol, C Deng, TTD Nguyen, ...
Communications Biology 7 (1), 551, 2024
12024
Microfluidics for Low Input Epigenomic Analysis and Its Application to Brain Neuroscience
C Deng
Virginia Tech, 2021
12021
Genetic regulation of cell type–specific chromatin accessibility shapes brain disease etiology
B Zeng, J Bendl, C Deng, D Lee, R Misir, SM Reach, SP Kleopoulos, ...
Science 384 (6698), eadh4265, 2024
2024
Epigenomic tomography for probing spatially defined chromatin state in the brain
Z Liu, C Deng, Z Zhou, Y Xiao, S Jiang, B Zhu, LB Naler, X Jia, DD Yao, ...
Cell Reports Methods 4 (3), 2024
2024
Epigenomic tomography for probing spatially-defined molecular state in the brain
Z Liu, C Deng, Z Zhou, Y Xiao, S Jiang, B Zhu, LB Naler, X Jia, D Yao, ...
bioRxiv, 2022.11. 24.517865, 2022
2022
Native MOWChIP-seq: Genome-wide profiles of key protein bindings reveal functional differences among various brain regions
Z Liu, LB Naler, Y Zhu, C Deng, Q Zhang, B Zhu, Z Zhou, M Sarma, ...
bioRxiv, 2021.07. 11.451963, 2021
2021
Devices and applications at the micro-and nanoscale rsc. li/loc
B Yang, X Jiang, X Fang, J Kong, Y Zheng, Z Wu, L Lin, X Zheng, Y Hou, ...
Lab Chip 21 (4364), 4285-4310, 2021
2021
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